Chemical elements
  Manganese
    Isotopes
    Energy
    Production
    Application
    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
      1vew
      1vha
      1vj2
      1vj7
      1vkm
      1vln
      1vs1
      1vsf
      1vzt
      1vzu
      1vzx
      1w2c
      1w2d
      1w2z
      1w47
      1w4a
      1w5c
      1wao
      1wbf
      1wbl
      1wci
      1wgi
      1wgj
      1wkm
      1wl9
      1wlj
      1wog
      1woi
      1wpn
      1wrn
      1wse
      1wsf
      1wsg
      1wuv
      1wva
      1wvb
      1x7n
      1x7w
      1x7x
      1x7y
      1x7z
      1x80
      1x83
      1x84
      1xdc
      1xhb
      1xhv
      1xib
      1xic
      1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Winged Bean Lectin Complexed With Methyl-Alpha-D-Galactose (pdb 1wbl)






The binding sites of Manganese atom in the structure of Winged Bean Lectin Complexed With Methyl-Alpha-D-Galactose (pdb code 1wbl). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1wbl structure was solved by M.M.PRABU, R.SANKARANARAYANAN, K.D.PURI, V.SHARMA, A.SUROLIA, M.VIJAYAN, K.SUGUNA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)100.0-2.5
Space groupP21212
a (A)157.585
b (A)91.908
c (A)73.283
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.7
Rfree (%)25.9


Manganese Binding Sites:

Manganese binding site 1 out of 4 in 1wbl


Manganese binding site 1 out of 4 in 1wbl
Click to enlarge
stereopicture of Manganese binding site 1 out of 4 in 1wbl
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1wbl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu122, A: Asp124, A: Trp130, A: Asp131, A: Pro132, A: His136, A: Val144, A: Ser146, A: Ca303, A: Hoh604, A: Hoh605, A: Hoh606,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu1223.69
MnOE2 A:Glu1222.45
MnCD A:Glu1223.40
MnCG A:Glu1224.73
MnCB A:Asp1243.94
MnOD2 A:Asp1242.50
MnOD1 A:Asp1244.72
MnCG A:Asp1243.60
MnCD1 A:Trp1304.52
MnNE1 A:Trp1304.44
MnCB A:Asp1314.54
MnOD2 A:Asp1313.68
MnOD1 A:Asp1312.21
MnCG A:Asp1313.26
MnCA A:Asp1314.91
MnCD A:Pro1324.62
MnNE2 A:His1362.50
MnND1 A:His1364.52
MnCD2 A:His1363.54
MnCE1 A:His1363.35
MnCG A:His1364.64
MnO A:Val1444.25
MnOG A:Ser1463.92
MnCA A:Ca3034.49
MnO A:Hoh6042.31
MnO A:Hoh6052.59
MnO A:Hoh6064.34

interactive model:


Manganese binding site 2 out of 4 in 1wbl


Manganese binding site 2 out of 4 in 1wbl
Click to enlarge
stereopicture of Manganese binding site 2 out of 4 in 1wbl
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1wbl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Phe107, B: Glu122, B: Asp124, B: Trp130, B: Asp131, B: His136, B: Val144, B: Ser146, B: Ca303, B: Hoh604, B: Hoh605, B: Hoh606,

conact list:


AtomAtomDistance (A)
MnCZ B:Phe1074.95
MnOE1 B:Glu1223.22
MnOE2 B:Glu1222.36
MnCD B:Glu1223.14
MnCG B:Glu1224.56
MnCB B:Asp1243.81
MnOD2 B:Asp1242.71
MnOD1 B:Asp1244.67
MnCG B:Asp1243.59
MnCD1 B:Trp1304.85
MnNE1 B:Trp1304.68
MnCB B:Asp1314.59
MnOD2 B:Asp1313.54
MnOD1 B:Asp1312.32
MnCG B:Asp1313.26
MnNE2 B:His1362.75
MnND1 B:His1364.87
MnCD2 B:His1363.61
MnCE1 B:His1363.77
MnCG B:His1364.83
MnO B:Val1444.11
MnOG B:Ser1463.77
MnCA B:Ca3034.61
MnO B:Hoh6042.46
MnO B:Hoh6052.29
MnO B:Hoh6064.31

interactive model:


Manganese binding site 3 out of 4 in 1wbl


Manganese binding site 3 out of 4 in 1wbl
Click to enlarge
stereopicture of Manganese binding site 3 out of 4 in 1wbl
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1wbl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu122, C: Asp124, C: Trp130, C: Asp131, C: Pro132, C: His136, C: Val144, C: Ser146, C: Ca303, C: Hoh504, C: Hoh505,

conact list:


AtomAtomDistance (A)
MnOE1 C:Glu1223.08
MnOE2 C:Glu1222.47
MnCD C:Glu1223.13
MnCG C:Glu1224.56
MnCB C:Asp1243.98
MnOD2 C:Asp1242.76
MnOD1 C:Asp1244.88
MnCG C:Asp1243.75
MnCD1 C:Trp1304.73
MnNE1 C:Trp1304.61
MnCB C:Asp1314.54
MnOD2 C:Asp1313.26
MnOD1 C:Asp1312.32
MnCG C:Asp1313.15
MnCD C:Pro1324.78
MnNE2 C:His1362.80
MnND1 C:His1364.85
MnCD2 C:His1363.81
MnCE1 C:His1363.68
MnCG C:His1364.95
MnO C:Val1444.02
MnCB C:Ser1464.88
MnOG C:Ser1463.61
MnCA C:Ca3034.27
MnO C:Hoh5042.30
MnO C:Hoh5054.32

interactive model:


Manganese binding site 4 out of 4 in 1wbl


Manganese binding site 4 out of 4 in 1wbl
Click to enlarge
stereopicture of Manganese binding site 4 out of 4 in 1wbl
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1wbl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu122, D: Asp124, D: Trp130, D: Asp131, D: Pro132, D: His136, D: Val144, D: Ser146, D: Ca303, D: Hoh604, D: Hoh605, D: Hoh606,

conact list:


AtomAtomDistance (A)
MnOE1 D:Glu1223.28
MnOE2 D:Glu1222.31
MnCD D:Glu1223.13
MnCG D:Glu1224.51
MnCB D:Asp1243.86
MnOD2 D:Asp1242.76
MnOD1 D:Asp1244.76
MnCG D:Asp1243.65
MnCD1 D:Trp1304.64
MnNE1 D:Trp1304.51
MnCB D:Asp1314.59
MnOD2 D:Asp1313.27
MnOD1 D:Asp1312.45
MnCG D:Asp1313.20
MnCD D:Pro1324.89
MnNE2 D:His1362.69
MnND1 D:His1364.73
MnCD2 D:His1363.65
MnCE1 D:His1363.60
MnCG D:His1364.80
MnO D:Val1444.03
MnOG D:Ser1463.79
MnCA D:Ca3034.61
MnO D:Hoh6042.34
MnO D:Hoh6052.59
MnO D:Hoh6064.29

interactive model:




© Copyright 2008-2012 by atomistry.com