Manganese in PDB 1vj2: Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution

The structure of Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution, PDB code: 1vj2 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.07 / 1.65
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	52.550, 52.550, 96.267, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 24.9

The binding sites of Manganese atom in the Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution (pdb code 1vj2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution, PDB code: 1vj2:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn115 b:30.7 occ:1.00 O A:HOH135 2.1 24.7 1.0 NE2 A:HIS92 2.1 25.2 1.0 NE2 A:HIS52 2.2 33.1 1.0 NE2 A:HIS54 2.2 27.2 1.0 O A:HOH124 2.2 31.1 1.0 NE2 A:HIS58 2.2 29.6 1.0 CD2 A:HIS54 3.0 26.4 1.0 CE1 A:HIS92 3.1 27.7 1.0 CD2 A:HIS92 3.1 25.2 1.0 CD2 A:HIS52 3.2 33.7 1.0 CE1 A:HIS52 3.2 36.0 1.0 CD2 A:HIS58 3.2 27.0 1.0 CE1 A:HIS58 3.2 31.1 1.0 CE1 A:HIS54 3.3 29.4 1.0 ND1 A:HIS92 4.2 26.9 1.0 CG A:HIS54 4.2 27.2 1.0 CG A:HIS92 4.3 26.0 1.0 ND1 A:HIS52 4.3 34.7 1.0 CG A:HIS52 4.3 30.7 1.0 O4 A:UNL116 4.3 46.3 1.0 ND1 A:HIS54 4.3 25.1 1.0 ND1 A:HIS58 4.3 30.6 1.0 CG A:HIS58 4.4 27.1 1.0 O A:HOH126 4.4 32.9 1.0 O3 A:UNL116 4.8 43.5 1.0 O1 A:UNL116 4.8 38.9 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A Novel Family of Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn115 b:31.4 occ:1.00 O B:HOH137 2.0 32.3 1.0 NE2 B:HIS92 2.2 23.5 1.0 NE2 B:HIS58 2.2 30.2 1.0 NE2 B:HIS54 2.2 31.7 1.0 O B:HOH161 2.3 35.1 1.0 NE2 B:HIS52 2.4 33.5 1.0 CE1 B:HIS54 3.1 30.8 1.0 CE1 B:HIS52 3.1 35.5 1.0 CD2 B:HIS58 3.1 31.2 1.0 CD2 B:HIS92 3.1 25.3 1.0 CE1 B:HIS92 3.1 27.3 1.0 CE1 B:HIS58 3.2 32.0 1.0 CD2 B:HIS54 3.2 30.5 1.0 CD2 B:HIS52 3.5 32.1 1.0 O B:HOH200 3.7 51.4 1.0 ND1 B:HIS54 4.2 30.6 1.0 ND1 B:HIS92 4.2 28.4 1.0 ND1 B:HIS52 4.2 32.6 1.0 CG B:HIS92 4.2 24.6 1.0 CG B:HIS58 4.3 30.7 1.0 ND1 B:HIS58 4.3 29.0 1.0 CG B:HIS54 4.3 27.6 1.0 CG B:HIS52 4.4 30.6 1.0 O B:HOH160 4.5 34.1 1.0 O B:HOH133 4.6 36.1 1.0

L.Jaroszewski, R.Schwarzenbacher, F.Von Delft, D.Mcmullan, L.S.Brinen, J.M.Canaves, X.Dai, A.M.Deacon, M.Didonato, M.A.Elsliger, S.Eshagi, R.Floyd, A.Godzik, C.Grittini, S.K.Grzechnik, E.Hampton, I.Levin, C.Karlak, H.E.Klock, E.Koesema, J.S.Kovarik, A.Kreusch, P.Kuhn, S.A.Lesley, T.M.Mcphillips, M.D.Miller, A.Morse, K.Moy, J.Ouyang, R.Page, K.Quijano, R.Reyes, F.Rezezadeh, A.Robb, E.Sims, G.Spraggon, R.C.Stevens, H.Van Den Bedem, J.Velasquez, J.Vincent, X.Wang, B.West, G.Wolf, Q.Xu, K.O.Hodgson, J.Wooley, I.A.Wilson. Crystal Structure of A Novel Manganese-Containing Cupin (TM1459) From Thermotoga Maritima at 1.65 A Resolution. Proteins V. 56 611 2004.
ISSN: ISSN 0887-3585
PubMed: 15229893
DOI: 10.1002/PROT.20130