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Manganese in PDB 1v1f: Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions

Protein crystallography data

The structure of Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions, PDB code: 1v1f was solved by M.J.Sanchez-Barrena, M.Martinez-Ripoll, J.K.Zhu, A.Albert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 91.900, 91.900, 85.600, 90.00, 90.00, 90.00
R / Rfree (%) 23.7 / 26.2

Other elements in 1v1f:

The structure of Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions also contains other interesting chemical elements:

Iodine (I) 7 atoms
Calcium (Ca) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions (pdb code 1v1f). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions, PDB code: 1v1f:

Manganese binding site 1 out of 1 in 1v1f

Go back to Manganese Binding Sites List in 1v1f
Manganese binding site 1 out of 1 in the Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the Arabidopsis Thaliana SOS3 Complexed with Calcium(II) and Manganese(II) Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1210

b:59.4
occ:1.00
O A:LYS171 2.0 59.6 1.0
O A:HOH2039 2.2 58.9 1.0
OD1 A:ASP165 2.2 61.5 1.0
OE1 A:GLU176 2.4 54.1 1.0
OE2 A:GLU176 2.5 52.4 1.0
CD A:GLU176 2.7 54.0 1.0
OD1 A:ASP169 2.8 74.0 1.0
C A:LYS171 3.2 59.6 1.0
O A:LYS167 3.2 69.6 1.0
CG A:ASP165 3.4 62.6 1.0
CG A:ASP169 3.9 68.2 1.0
CA A:ASP165 3.9 62.1 1.0
N A:ILE172 4.0 58.6 1.0
CA A:ILE172 4.0 57.4 1.0
CG A:LYS167 4.0 67.7 1.0
CB A:ASP165 4.1 62.2 1.0
N A:LYS171 4.2 60.4 1.0
CA A:LYS171 4.2 60.6 1.0
OD2 A:ASP169 4.2 68.6 1.0
C A:ASP165 4.2 63.4 1.0
CG A:GLU176 4.2 53.2 1.0
C A:LYS167 4.3 68.9 1.0
OD2 A:ASP173 4.3 56.8 1.0
N A:ASP173 4.3 56.3 1.0
OD2 A:ASP165 4.4 61.3 1.0
O A:ASP165 4.6 63.3 1.0
C A:ILE172 4.6 56.8 1.0
N A:LYS167 4.6 68.2 1.0
N A:ASP169 4.7 66.6 1.0
N A:ARG166 4.7 65.2 1.0
CD A:LYS171 4.9 68.6 1.0
CA A:LYS167 4.9 68.4 1.0
CG A:LYS171 4.9 64.6 1.0
CB A:LYS171 4.9 61.6 1.0
CB A:GLU176 5.0 52.7 1.0
CB A:LYS167 5.0 68.0 1.0

Reference:

M.J.Sanchez-Barrena, M.Martinez-Ripoll, J.K.Zhu, A.Albert. The Structure of the Arabidopsis Thaliana SOS3: Molecular Mechanism of Sensing Calcium For Salt Stress Response J.Mol.Biol. V. 345 1253 2005.
ISSN: ISSN 0022-2836
PubMed: 15644219
DOI: 10.1016/J.JMB.2004.11.025
Page generated: Tue Dec 15 03:56:42 2020

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