Manganese in PDB 1uzy: Erythrina Crystagalli Lectin

The structure of Erythrina Crystagalli Lectin, PDB code: 1uzy was solved by K.Turton, R.Natesh, N.Thiyagarajan, J.A.Chaddock, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.00
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	134.018, 134.018, 81.636, 90.00, 90.00, 120.00
R / Rfree (%)	18.9 / 20.9

The structure of Erythrina Crystagalli Lectin also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Erythrina Crystagalli Lectin (pdb code 1uzy). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Erythrina Crystagalli Lectin, PDB code: 1uzy:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Erythrina Crystagalli Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Erythrina Crystagalli Lectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1248 b:16.7 occ:1.00 OD2 A:ASP129 2.2 11.8 1.0 OE2 A:GLU127 2.2 16.4 1.0 OD1 A:ASP136 2.2 13.9 1.0 O A:HOH2220 2.2 14.0 1.0 O A:HOH2221 2.3 9.2 1.0 NE2 A:HIS142 2.4 13.2 1.0 CG A:ASP129 3.2 12.6 1.0 CG A:ASP136 3.2 14.0 1.0 CD A:GLU127 3.2 16.8 1.0 CE1 A:HIS142 3.2 13.6 1.0 CD2 A:HIS142 3.4 16.7 1.0 CB A:ASP129 3.5 11.8 1.0 OE1 A:GLU127 3.5 15.8 1.0 OD2 A:ASP136 3.7 12.8 1.0 O A:HOH2105 4.0 11.5 1.0 OG A:SER152 4.1 15.2 1.0 CA A:CA1247 4.2 16.5 1.0 OD1 A:ASP129 4.3 12.3 1.0 CB A:ASP136 4.3 14.4 1.0 ND1 A:HIS142 4.4 14.1 1.0 O A:HOH2132 4.4 16.4 1.0 CG A:HIS142 4.5 14.8 1.0 CG A:GLU127 4.5 13.1 1.0 O A:ILE150 4.6 17.9 1.0 CD A:PRO137 4.7 16.8 1.0 NE1 A:TRP135 4.8 16.6 1.0 CA A:ASP136 4.9 15.0 1.0 CD1 A:TRP135 5.0 16.4 1.0

Manganese binding site 2 out of 2 in the Erythrina Crystagalli Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Erythrina Crystagalli Lectin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn1250 b:18.5 occ:1.00 OD2 B:ASP129 2.1 14.2 1.0 OD1 B:ASP136 2.2 16.2 1.0 O B:HOH2235 2.2 15.7 1.0 O B:HOH2236 2.3 17.7 1.0 OE2 B:GLU127 2.3 13.9 1.0 NE2 B:HIS142 2.4 18.4 1.0 CG B:ASP129 3.1 13.9 1.0 CE1 B:HIS142 3.2 16.4 1.0 CG B:ASP136 3.2 19.1 1.0 CD B:GLU127 3.2 16.7 1.0 CB B:ASP129 3.5 14.4 1.0 CD2 B:HIS142 3.5 19.5 1.0 OE1 B:GLU127 3.5 13.7 1.0 OD2 B:ASP136 3.7 16.6 1.0 O B:HOH2123 3.9 15.1 1.0 CA B:CA1249 4.2 18.3 1.0 OD1 B:ASP129 4.2 13.4 1.0 OG B:SER152 4.2 20.6 1.0 CB B:ASP136 4.2 18.5 1.0 ND1 B:HIS142 4.4 15.6 1.0 O B:HOH2147 4.4 20.7 1.0 O B:ILE150 4.5 20.5 1.0 CG B:HIS142 4.6 19.0 1.0 CG B:GLU127 4.6 13.7 1.0 CD B:PRO137 4.8 22.8 1.0 CA B:ASP136 4.9 21.4 1.0 CA B:ASP129 5.0 14.0 1.0

K.Turton, R.Natesh, N.Thiyagarajan, J.A.Chaddock, K.R.Acharya. Crystal Structures of Erythrina Cristagalli Lectin with Bound N-Linked Oligosaccharide and Lactose. Glycobiology V. 14 923 2004.
ISSN: ISSN 0959-6658
PubMed: 15201215
DOI: 10.1093/GLYCOB/CWH114