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Manganese in PDB 1u8x: Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase

Enzymatic activity of Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase

All present enzymatic activity of Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase:
3.2.1.122;

Protein crystallography data

The structure of Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase, PDB code: 1u8x was solved by S.S.Rajan, X.Yang, F.Collart, W.F.Anderson, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.02 / 2.05
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.604, 102.017, 144.748, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 22.1

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase (pdb code 1u8x). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase, PDB code: 1u8x:

Manganese binding site 1 out of 1 in 1u8x

Go back to Manganese Binding Sites List in 1u8x
Manganese binding site 1 out of 1 in the Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Glva From Bacillus Subtilis, A Metal-Requiring, Nad-Dependent 6-Phospho-Alpha-Glucosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mn700

b:33.1
occ:0.45
 O X:HOH1053 2.0 40.1 1.0
O3 X:G6P902 2.2 53.6 0.5
NE2 X:HIS202 2.2 27.4 1.0
SG X:CYS171 2.3 36.5 1.0
O2 X:G6P902 2.4 53.2 0.5
O7N X:NAD900 2.8 45.7 0.4
C3 X:G6P902 3.1 53.5 0.5
C2 X:G6P902 3.1 53.6 0.5
C7N X:NAD900 3.2 45.6 0.4
CE1 X:HIS202 3.2 27.0 1.0
CB X:CYS171 3.2 35.8 1.0
CD2 X:HIS202 3.3 29.3 1.0
N7N X:NAD900 3.3 45.5 0.4
CA X:CYS171 3.7 35.5 1.0
N X:ASP172 4.0 35.1 1.0
ND2 X:ASN149 4.1 42.7 1.0
ND2 X:ASN201 4.2 26.3 1.0
C3N X:NAD900 4.2 46.1 0.4
OD1 X:ASN149 4.2 46.2 1.0
C X:CYS171 4.3 35.3 1.0
OD1 X:ASP172 4.3 37.6 1.0
ND1 X:HIS202 4.3 27.9 1.0
CG X:HIS202 4.4 26.8 1.0
N X:MSE173 4.4 34.2 1.0
C4 X:G6P902 4.4 52.8 0.5
OD1 X:ASN201 4.5 29.3 1.0
C1 X:G6P902 4.5 53.9 0.5
CB X:MSE173 4.6 34.9 1.0
CG X:ASN149 4.6 41.1 1.0
C4N X:NAD900 4.7 46.4 0.4
CG X:ASN201 4.8 26.2 1.0
O X:ILE170 5.0 34.1 1.0
CE1 X:TYR265 5.0 26.6 1.0
N X:CYS171 5.0 35.3 1.0

Reference:

S.S.Rajan, X.Yang, F.Collart, V.L.Yip, S.G.Withers, A.Varrot, J.Thompson, G.J.Davies, W.F.Anderson. Novel Catalytic Mechanism of Glycoside Hydrolysis Based on the Structure of An Nad(+)/Mn(2+)-Dependent Phospho-Alpha-Glucosidase From Bacillus Subtilis. Structure V. 12 1619 2004.
ISSN: ISSN 0969-2126
PubMed: 15341727
DOI: 10.1016/J.STR.2004.06.020
Page generated: Tue Dec 15 03:56:17 2020

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