Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
      1tei
      1tl7
      1tvy
      1tw5
      1twa
      1twc
      1twf
      1twg
      1twh
      1txo
      1u32
      1u3e
      1u5b
      1u8x
      1ucg
      1ues
      1ukg
      1uon
      1up6
      1ut5
      1uvi
      1uvj
      1uvk
      1uvl
      1uvm
      1uvn
      1uw8
      1uzy
      1uzz
      1v00
      1v11
      1v16
      1v1f
      1v1m
      1v6i
      1v6j
      1v6k
      1v6l
      1v6m
      1v6n
      1v6o
      1v7p
      1v7z
      1v83
      1v84
      1v9q
      1val
      1vam
      1var
      1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Rna Polymerase II Complexed With Utp At 2.3 A Resolution (pdb 1twf)






The binding sites of Manganese atom in the structure of Rna Polymerase II Complexed With Utp At 2.3 A Resolution (pdb code 1twf). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1twf structure was solved by K.D.WESTOVER, D.A.BUSHNELL, R.D.KORNBERG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)40.0-2.3
Space groupI222
a (A)123.000
b (A)223.000
c (A)374.000
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)24.7
Rfree (%)29.4


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 1twf


Manganese binding site 1 out of 2 in 1twf
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 1twf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1twf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp481, A: Asp483, A: Asp485, A: Mn3010, B: Utp3571,

conact list:


AtomAtomDistance (A)
MnO A:Asp4814.43
MnN A:Asp4814.61
MnCB A:Asp4814.37
MnOD2 A:Asp4813.04
MnC A:Asp4814.61
MnOD1 A:Asp4812.19
MnCG A:Asp4812.96
MnCA A:Asp4814.81
MnN A:Asp4834.42
MnCB A:Asp4834.47
MnOD2 A:Asp4832.26
MnC A:Asp4834.86
MnOD1 A:Asp4833.24
MnCG A:Asp4833.07
MnCA A:Asp4834.82
MnN A:Asp4854.69
MnCB A:Asp4854.60
MnOD2 A:Asp4852.29
MnOD1 A:Asp4853.41
MnCG A:Asp4853.20
MnMN A:Mn30103.78
MnPG B:Utp35713.73
MnO3B B:Utp35713.73
MnO2G B:Utp35712.48
MnO3G B:Utp35714.74
MnO1B B:Utp35712.73
MnPB B:Utp35713.08
MnO2B B:Utp35712.79
MnO3A B:Utp35714.60
MnO1G B:Utp35714.75

interactive model:


Manganese binding site 2 out of 2 in 1twf


Manganese binding site 2 out of 2 in 1twf
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 1twf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1twf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp481, A: Asp483, B: Asp837, B: Gln986, B: Arg1020, A: Mn3009, B: Utp3571,

conact list:


AtomAtomDistance (A)
MnCB A:Asp4814.39
MnOD2 A:Asp4812.26
MnOD1 A:Asp4813.89
MnCG A:Asp4813.31
MnCB A:Asp4834.49
MnOD2 A:Asp4833.93
MnOD1 A:Asp4832.14
MnCG A:Asp4833.33
MnCB B:Asp8373.91
MnOD2 B:Asp8372.66
MnOD1 B:Asp8373.85
MnCG B:Asp8373.23
MnNE2 B:Gln9864.59
MnOE1 B:Gln9864.84
MnCZ B:Arg10204.80
MnNH2 B:Arg10203.91
MnNH1 B:Arg10204.98
MnMN A:Mn30093.78
MnO3B B:Utp35714.48
MnPA B:Utp35713.56
MnO2A B:Utp35714.99
MnC6 B:Utp35714.73
MnO1B B:Utp35712.55
MnPB B:Utp35712.92
MnO4' B:Utp35714.81
MnO5' B:Utp35714.00
MnO2B B:Utp35712.95
MnO3A B:Utp35713.20
MnO1A B:Utp35712.90

interactive model:




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