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Manganese in PDB 1t6b: Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor

Protein crystallography data

The structure of Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor, PDB code: 1t6b was solved by E.Santelli, L.A.Bankston, S.H.Leppla, R.C.Liddington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.160, 94.118, 135.597, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 26.6

Other elements in 1t6b:

The structure of Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor (pdb code 1t6b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor, PDB code: 1t6b:

Manganese binding site 1 out of 1 in 1t6b

Go back to Manganese Binding Sites List in 1t6b
Manganese binding site 1 out of 1 in the Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of B. Anthracis Protective Antigen Complexed with Human Anthrax Toxin Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mn303

b:33.8
occ:1.00
OD2 X:ASP683 1.9 17.6 1.0
OG Y:SER54 2.1 16.0 1.0
O Y:HOH401 2.1 26.8 1.0
O Y:HOH402 2.1 29.8 1.0
OG Y:SER52 2.3 11.1 1.0
OG1 Y:THR118 2.3 18.8 1.0
CG X:ASP683 2.9 17.1 1.0
CB Y:SER54 3.1 17.2 1.0
CB Y:SER52 3.2 14.3 1.0
OD1 X:ASP683 3.3 13.6 1.0
CG2 Y:THR118 3.5 18.1 1.0
CB Y:THR118 3.5 18.6 1.0
N Y:SER54 3.9 17.0 1.0
OD1 Y:ASP148 4.0 24.7 1.0
CA Y:SER54 4.0 17.7 1.0
O Y:HOH415 4.2 50.3 1.0
OD2 Y:ASP148 4.2 23.7 1.0
OD2 Y:ASP50 4.2 19.2 1.0
CB X:ASP683 4.2 16.8 1.0
OD1 Y:ASP50 4.3 18.0 1.0
O Y:LYS150 4.3 23.4 1.0
CA Y:SER52 4.5 14.6 1.0
CA Y:THR118 4.6 18.3 1.0
CG Y:ASP148 4.6 23.8 1.0
CG Y:ASP50 4.7 19.2 1.0
C Y:SER54 4.7 18.8 1.0
C Y:SER52 4.8 15.0 1.0
N Y:THR118 4.8 18.3 1.0
N Y:VAL55 4.9 18.8 1.0
N Y:GLY53 5.0 15.5 1.0

Reference:

E.Santelli, L.A.Bankston, S.H.Leppla, R.C.Liddington. Crystal Structure of A Complex Between Anthrax Toxin and Its Host Cell Receptor Nature V. 430 905 2004.
ISSN: ISSN 0028-0836
PubMed: 15243628
DOI: 10.1038/NATURE02763
Page generated: Tue Dec 15 03:55:53 2020

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