Manganese in PDB 1t36: Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Enzymatic activity of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
All present enzymatic activity of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate:
6.3.5.5;
Protein crystallography data
The structure of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate, PDB code: 1t36
was solved by
J.B.Thoden,
X.Huang,
F.M.Raushel,
H.M.Holden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.500,
164.900,
333.100,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Other elements in 1t36:
The structure of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate also contains other interesting chemical elements:
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Manganese atom in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
(pdb code 1t36). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the
Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate, PDB code: 1t36:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 1 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1074
b:25.0
occ:1.00
|
OD1
|
A:ASN301
|
2.0
|
23.3
|
1.0
|
O3B
|
A:ADP1087
|
2.1
|
27.7
|
1.0
|
O
|
A:HOH1191
|
2.1
|
24.8
|
1.0
|
OE1
|
A:GLU299
|
2.2
|
32.5
|
1.0
|
O1
|
A:PO41078
|
2.2
|
24.8
|
1.0
|
OE2
|
A:GLU299
|
2.3
|
18.0
|
1.0
|
CD
|
A:GLU299
|
2.6
|
37.8
|
1.0
|
CG
|
A:ASN301
|
3.0
|
23.6
|
1.0
|
PB
|
A:ADP1087
|
3.2
|
23.3
|
1.0
|
ND2
|
A:ASN301
|
3.4
|
21.6
|
1.0
|
O1B
|
A:ADP1087
|
3.4
|
20.9
|
1.0
|
P
|
A:PO41078
|
3.4
|
29.1
|
1.0
|
O3
|
A:PO41078
|
3.6
|
18.0
|
1.0
|
MN
|
A:MN1075
|
3.7
|
23.4
|
1.0
|
CB
|
A:MET174
|
3.7
|
23.2
|
1.0
|
K
|
A:K1077
|
3.8
|
27.5
|
1.0
|
CG
|
A:GLU299
|
4.1
|
12.7
|
1.0
|
O
|
A:HOH1168
|
4.2
|
29.0
|
1.0
|
O2B
|
A:ADP1087
|
4.2
|
21.7
|
1.0
|
O4
|
A:PO41078
|
4.3
|
21.6
|
1.0
|
NH2
|
A:ARG303
|
4.3
|
18.9
|
1.0
|
O
|
A:THR173
|
4.3
|
27.4
|
1.0
|
NH2
|
A:ARG129
|
4.3
|
29.3
|
1.0
|
O3A
|
A:ADP1087
|
4.3
|
18.2
|
1.0
|
CA
|
A:MET174
|
4.3
|
22.6
|
1.0
|
O2
|
A:PO41078
|
4.4
|
21.9
|
1.0
|
CB
|
A:ASN301
|
4.4
|
21.4
|
1.0
|
O1A
|
A:ADP1087
|
4.6
|
26.2
|
1.0
|
OE1
|
A:GLN285
|
4.8
|
19.3
|
1.0
|
PA
|
A:ADP1087
|
4.8
|
25.4
|
1.0
|
OE1
|
A:GLU127
|
4.9
|
22.9
|
1.0
|
NH1
|
A:ARG129
|
5.0
|
24.8
|
1.0
|
CB
|
A:GLU299
|
5.0
|
18.8
|
1.0
|
|
Manganese binding site 2 out
of 12 in 1t36
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Manganese Binding Sites List in 1t36
Manganese binding site 2 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1075
b:23.4
occ:1.00
|
OE1
|
A:GLN285
|
2.0
|
19.3
|
1.0
|
O1A
|
A:ADP1087
|
2.1
|
26.2
|
1.0
|
O1B
|
A:ADP1087
|
2.1
|
20.9
|
1.0
|
O3
|
A:PO41078
|
2.2
|
18.0
|
1.0
|
OE2
|
A:GLU299
|
2.3
|
18.0
|
1.0
|
O
|
A:HOH1605
|
2.3
|
26.9
|
1.0
|
CD
|
A:GLN285
|
3.0
|
34.4
|
1.0
|
PB
|
A:ADP1087
|
3.2
|
23.3
|
1.0
|
CD
|
A:GLU299
|
3.3
|
37.8
|
1.0
|
PA
|
A:ADP1087
|
3.3
|
25.4
|
1.0
|
P
|
A:PO41078
|
3.3
|
29.1
|
1.0
|
NE2
|
A:GLN285
|
3.4
|
24.4
|
1.0
|
O3A
|
A:ADP1087
|
3.6
|
18.2
|
1.0
|
O3B
|
A:ADP1087
|
3.6
|
27.7
|
1.0
|
O1
|
A:PO41078
|
3.7
|
24.8
|
1.0
|
MN
|
A:MN1074
|
3.7
|
25.0
|
1.0
|
O
|
A:HOH1305
|
3.8
|
9.2
|
1.0
|
O4
|
A:PO41078
|
3.8
|
21.6
|
1.0
|
CG
|
A:GLU299
|
3.9
|
12.7
|
1.0
|
NE2
|
A:HIS243
|
3.9
|
21.2
|
1.0
|
OE1
|
A:GLU299
|
4.1
|
32.5
|
1.0
|
ND2
|
A:ASN301
|
4.2
|
21.6
|
1.0
|
CE1
|
A:HIS243
|
4.3
|
28.4
|
1.0
|
O5'
|
A:ADP1087
|
4.3
|
21.8
|
1.0
|
O2A
|
A:ADP1087
|
4.3
|
26.4
|
1.0
|
CG
|
A:GLN285
|
4.4
|
17.2
|
1.0
|
C5'
|
A:ADP1087
|
4.4
|
17.3
|
1.0
|
OG1
|
A:THR244
|
4.5
|
20.4
|
1.0
|
O3'
|
A:ADP1087
|
4.5
|
21.6
|
1.0
|
O2B
|
A:ADP1087
|
4.5
|
21.7
|
1.0
|
O2
|
A:PO41078
|
4.6
|
21.9
|
1.0
|
CD2
|
A:HIS243
|
4.7
|
17.3
|
1.0
|
OD1
|
A:ASN301
|
4.9
|
23.3
|
1.0
|
|
Manganese binding site 3 out
of 12 in 1t36
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Manganese Binding Sites List in 1t36
Manganese binding site 3 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1079
b:37.7
occ:1.00
|
O3B
|
A:ADP1088
|
2.0
|
27.2
|
1.0
|
O2A
|
A:ADP1088
|
2.1
|
27.8
|
1.0
|
OE1
|
A:GLN829
|
2.1
|
37.7
|
1.0
|
O
|
A:HOH1608
|
2.2
|
34.6
|
1.0
|
OE2
|
A:GLU841
|
2.3
|
45.6
|
1.0
|
O
|
A:HOH1903
|
2.4
|
47.5
|
1.0
|
CD
|
A:GLN829
|
3.1
|
38.2
|
1.0
|
CD
|
A:GLU841
|
3.3
|
52.2
|
1.0
|
PB
|
A:ADP1088
|
3.3
|
34.6
|
1.0
|
PA
|
A:ADP1088
|
3.3
|
34.3
|
1.0
|
O3A
|
A:ADP1088
|
3.6
|
37.2
|
1.0
|
NE2
|
A:GLN829
|
3.6
|
45.8
|
1.0
|
CG
|
A:GLU841
|
3.8
|
44.7
|
1.0
|
O
|
A:HOH1522
|
3.9
|
17.2
|
1.0
|
OE1
|
A:GLU841
|
4.1
|
87.2
|
1.0
|
O2B
|
A:ADP1088
|
4.1
|
61.0
|
1.0
|
O
|
A:HOH1521
|
4.3
|
48.8
|
1.0
|
O3'
|
A:ADP1088
|
4.3
|
29.9
|
1.0
|
O1B
|
A:ADP1088
|
4.3
|
44.4
|
1.0
|
O5'
|
A:ADP1088
|
4.3
|
24.6
|
1.0
|
O1A
|
A:ADP1088
|
4.4
|
51.3
|
1.0
|
CG
|
A:GLN829
|
4.4
|
33.0
|
1.0
|
C5'
|
A:ADP1088
|
4.5
|
25.5
|
1.0
|
NE2
|
A:HIS788
|
4.5
|
30.4
|
1.0
|
OG
|
A:SER789
|
4.6
|
42.6
|
1.0
|
CE1
|
A:HIS788
|
4.7
|
28.3
|
1.0
|
ND2
|
A:ASN843
|
4.7
|
42.6
|
1.0
|
C3'
|
A:ADP1088
|
4.8
|
28.2
|
1.0
|
|
Manganese binding site 4 out
of 12 in 1t36
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Manganese Binding Sites List in 1t36
Manganese binding site 4 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn1074
b:27.1
occ:1.00
|
O
|
C:HOH1191
|
2.0
|
29.8
|
1.0
|
O3B
|
C:ADP1089
|
2.0
|
22.5
|
1.0
|
OD1
|
C:ASN301
|
2.1
|
29.6
|
1.0
|
O1
|
C:PO41078
|
2.2
|
22.9
|
1.0
|
OE1
|
C:GLU299
|
2.2
|
27.5
|
1.0
|
OE2
|
C:GLU299
|
2.2
|
22.1
|
1.0
|
CD
|
C:GLU299
|
2.6
|
45.3
|
1.0
|
CG
|
C:ASN301
|
3.1
|
14.7
|
1.0
|
PB
|
C:ADP1089
|
3.2
|
27.3
|
1.0
|
P
|
C:PO41078
|
3.3
|
25.2
|
1.0
|
O1B
|
C:ADP1089
|
3.3
|
27.1
|
1.0
|
O3
|
C:PO41078
|
3.4
|
16.9
|
1.0
|
ND2
|
C:ASN301
|
3.4
|
19.3
|
1.0
|
MN
|
C:MN1075
|
3.6
|
25.5
|
1.0
|
CB
|
C:MET174
|
3.8
|
24.1
|
1.0
|
K
|
C:K1077
|
3.8
|
27.1
|
1.0
|
CG
|
C:GLU299
|
4.1
|
18.8
|
1.0
|
O3A
|
C:ADP1089
|
4.1
|
17.3
|
1.0
|
NH2
|
C:ARG303
|
4.2
|
24.4
|
1.0
|
O
|
C:HOH1170
|
4.2
|
26.8
|
1.0
|
O2
|
C:PO41078
|
4.2
|
22.5
|
1.0
|
O4
|
C:PO41078
|
4.2
|
24.6
|
1.0
|
CA
|
C:MET174
|
4.3
|
32.7
|
1.0
|
O2B
|
C:ADP1089
|
4.3
|
18.1
|
1.0
|
NH2
|
C:ARG129
|
4.3
|
32.7
|
1.0
|
O
|
C:THR173
|
4.4
|
28.9
|
1.0
|
CB
|
C:ASN301
|
4.5
|
15.1
|
1.0
|
O1A
|
C:ADP1089
|
4.6
|
21.2
|
1.0
|
OE1
|
C:GLN285
|
4.8
|
23.7
|
1.0
|
PA
|
C:ADP1089
|
4.8
|
25.7
|
1.0
|
OE1
|
C:GLU127
|
4.9
|
35.0
|
1.0
|
O
|
C:HOH1192
|
4.9
|
28.2
|
1.0
|
CB
|
C:GLU299
|
5.0
|
24.8
|
1.0
|
|
Manganese binding site 5 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 5 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn1075
b:25.5
occ:1.00
|
O3
|
C:PO41078
|
2.1
|
16.9
|
1.0
|
O1A
|
C:ADP1089
|
2.1
|
21.2
|
1.0
|
O
|
C:HOH1587
|
2.2
|
39.4
|
1.0
|
O1B
|
C:ADP1089
|
2.2
|
27.1
|
1.0
|
OE1
|
C:GLN285
|
2.3
|
23.7
|
1.0
|
OE2
|
C:GLU299
|
2.3
|
22.1
|
1.0
|
CD
|
C:GLN285
|
3.0
|
17.1
|
1.0
|
NE2
|
C:GLN285
|
3.0
|
25.2
|
1.0
|
PB
|
C:ADP1089
|
3.2
|
27.3
|
1.0
|
CD
|
C:GLU299
|
3.3
|
45.3
|
1.0
|
P
|
C:PO41078
|
3.3
|
25.2
|
1.0
|
PA
|
C:ADP1089
|
3.3
|
25.7
|
1.0
|
O3A
|
C:ADP1089
|
3.5
|
17.3
|
1.0
|
MN
|
C:MN1074
|
3.6
|
27.1
|
1.0
|
O3B
|
C:ADP1089
|
3.7
|
22.5
|
1.0
|
O1
|
C:PO41078
|
3.8
|
22.9
|
1.0
|
O4
|
C:PO41078
|
3.8
|
24.6
|
1.0
|
CG
|
C:GLU299
|
3.8
|
18.8
|
1.0
|
O
|
C:HOH1300
|
3.8
|
14.1
|
1.0
|
NE2
|
C:HIS243
|
4.0
|
14.7
|
1.0
|
OE1
|
C:GLU299
|
4.1
|
27.5
|
1.0
|
ND2
|
C:ASN301
|
4.2
|
19.3
|
1.0
|
O2A
|
C:ADP1089
|
4.3
|
27.7
|
1.0
|
CE1
|
C:HIS243
|
4.3
|
15.8
|
1.0
|
O5'
|
C:ADP1089
|
4.3
|
30.9
|
1.0
|
O3'
|
C:ADP1089
|
4.4
|
20.9
|
1.0
|
O2
|
C:PO41078
|
4.4
|
22.5
|
1.0
|
C5'
|
C:ADP1089
|
4.5
|
16.7
|
1.0
|
CG
|
C:GLN285
|
4.5
|
15.8
|
1.0
|
O2B
|
C:ADP1089
|
4.5
|
18.1
|
1.0
|
OG1
|
C:THR244
|
4.6
|
19.7
|
1.0
|
CD2
|
C:HIS243
|
4.8
|
18.8
|
1.0
|
OD1
|
C:ASN301
|
4.9
|
29.6
|
1.0
|
|
Manganese binding site 6 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 6 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn1079
b:46.4
occ:1.00
|
O3B
|
C:ADP1090
|
1.9
|
45.9
|
1.0
|
O2A
|
C:ADP1090
|
2.1
|
43.0
|
1.0
|
OE2
|
C:GLU841
|
2.1
|
42.2
|
1.0
|
OE1
|
C:GLN829
|
2.2
|
45.3
|
1.0
|
O
|
C:HOH1589
|
2.2
|
42.9
|
1.0
|
O
|
C:HOH1590
|
2.3
|
55.1
|
1.0
|
CD
|
C:GLN829
|
3.0
|
61.9
|
1.0
|
CD
|
C:GLU841
|
3.1
|
50.1
|
1.0
|
NE2
|
C:GLN829
|
3.1
|
0.0
|
1.0
|
PA
|
C:ADP1090
|
3.3
|
45.5
|
1.0
|
PB
|
C:ADP1090
|
3.3
|
41.8
|
1.0
|
O3A
|
C:ADP1090
|
3.6
|
46.1
|
1.0
|
CG
|
C:GLU841
|
3.7
|
63.6
|
1.0
|
O
|
C:HOH1516
|
3.8
|
27.1
|
1.0
|
OE1
|
C:GLU841
|
3.9
|
57.4
|
1.0
|
O1B
|
C:ADP1090
|
4.2
|
51.5
|
1.0
|
O1A
|
C:ADP1090
|
4.2
|
55.0
|
1.0
|
O2B
|
C:ADP1090
|
4.2
|
77.6
|
1.0
|
O5'
|
C:ADP1090
|
4.3
|
48.8
|
1.0
|
C5'
|
C:ADP1090
|
4.4
|
31.9
|
1.0
|
O
|
C:HOH1514
|
4.4
|
35.3
|
1.0
|
ND2
|
C:ASN843
|
4.4
|
44.1
|
1.0
|
CG
|
C:GLN829
|
4.4
|
55.0
|
1.0
|
O3'
|
C:ADP1090
|
4.5
|
34.2
|
1.0
|
O
|
C:HOH1515
|
4.7
|
66.5
|
1.0
|
NE2
|
C:HIS788
|
4.7
|
28.7
|
1.0
|
OG
|
C:SER789
|
4.7
|
40.6
|
1.0
|
CE1
|
C:HIS788
|
4.9
|
26.0
|
1.0
|
C3'
|
C:ADP1090
|
4.9
|
26.4
|
1.0
|
|
Manganese binding site 7 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 7 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn1074
b:27.5
occ:1.00
|
O
|
E:HOH1193
|
2.0
|
26.7
|
1.0
|
O1
|
E:PO41078
|
2.1
|
26.5
|
1.0
|
O3B
|
E:ADP1089
|
2.2
|
18.6
|
1.0
|
OD1
|
E:ASN301
|
2.3
|
23.3
|
1.0
|
OE2
|
E:GLU299
|
2.3
|
26.3
|
1.0
|
OE1
|
E:GLU299
|
2.4
|
26.6
|
1.0
|
CD
|
E:GLU299
|
2.7
|
36.2
|
1.0
|
CG
|
E:ASN301
|
3.2
|
21.8
|
1.0
|
PB
|
E:ADP1089
|
3.3
|
29.2
|
1.0
|
O1B
|
E:ADP1089
|
3.3
|
20.9
|
1.0
|
P
|
E:PO41078
|
3.5
|
27.7
|
1.0
|
ND2
|
E:ASN301
|
3.5
|
15.7
|
1.0
|
O3
|
E:PO41078
|
3.7
|
19.8
|
1.0
|
MN
|
E:MN1075
|
3.7
|
27.2
|
1.0
|
K
|
E:K1077
|
3.8
|
30.6
|
1.0
|
CB
|
E:MET174
|
3.9
|
21.9
|
1.0
|
CG
|
E:GLU299
|
4.2
|
16.4
|
1.0
|
NH2
|
E:ARG303
|
4.2
|
20.1
|
1.0
|
O
|
E:HOH1171
|
4.3
|
25.5
|
1.0
|
O3A
|
E:ADP1089
|
4.3
|
22.3
|
1.0
|
CA
|
E:MET174
|
4.3
|
21.8
|
1.0
|
O4
|
E:PO41078
|
4.3
|
22.1
|
1.0
|
O2
|
E:PO41078
|
4.3
|
23.4
|
1.0
|
O2B
|
E:ADP1089
|
4.4
|
27.8
|
1.0
|
O
|
E:THR173
|
4.4
|
31.2
|
1.0
|
NH2
|
E:ARG129
|
4.4
|
20.1
|
1.0
|
O1A
|
E:ADP1089
|
4.5
|
28.0
|
1.0
|
CB
|
E:ASN301
|
4.6
|
14.5
|
1.0
|
OE1
|
E:GLU127
|
4.8
|
34.7
|
1.0
|
PA
|
E:ADP1089
|
4.8
|
26.6
|
1.0
|
O
|
E:HOH1194
|
4.9
|
38.0
|
1.0
|
OE1
|
E:GLN285
|
4.9
|
28.1
|
1.0
|
N
|
E:GLY175
|
5.0
|
34.4
|
1.0
|
CB
|
E:GLU299
|
5.0
|
22.1
|
1.0
|
|
Manganese binding site 8 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 8 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn1075
b:27.2
occ:1.00
|
O1B
|
E:ADP1089
|
2.1
|
20.9
|
1.0
|
O1A
|
E:ADP1089
|
2.1
|
28.0
|
1.0
|
O3
|
E:PO41078
|
2.2
|
19.8
|
1.0
|
O
|
E:HOH1597
|
2.2
|
19.5
|
1.0
|
OE1
|
E:GLN285
|
2.2
|
28.1
|
1.0
|
OE2
|
E:GLU299
|
2.2
|
26.3
|
1.0
|
CD
|
E:GLN285
|
3.2
|
45.8
|
1.0
|
PB
|
E:ADP1089
|
3.2
|
29.2
|
1.0
|
PA
|
E:ADP1089
|
3.3
|
26.6
|
1.0
|
P
|
E:PO41078
|
3.3
|
27.7
|
1.0
|
CD
|
E:GLU299
|
3.4
|
36.2
|
1.0
|
O3A
|
E:ADP1089
|
3.5
|
22.3
|
1.0
|
O1
|
E:PO41078
|
3.5
|
26.5
|
1.0
|
NE2
|
E:GLN285
|
3.5
|
27.2
|
1.0
|
O3B
|
E:ADP1089
|
3.7
|
18.6
|
1.0
|
MN
|
E:MN1074
|
3.7
|
27.5
|
1.0
|
NE2
|
E:HIS243
|
3.8
|
23.3
|
1.0
|
O
|
E:HOH1303
|
3.8
|
12.9
|
1.0
|
O4
|
E:PO41078
|
3.8
|
22.1
|
1.0
|
CG
|
E:GLU299
|
4.0
|
16.4
|
1.0
|
CE1
|
E:HIS243
|
4.2
|
26.4
|
1.0
|
O5'
|
E:ADP1089
|
4.2
|
25.9
|
1.0
|
O3'
|
E:ADP1089
|
4.3
|
23.3
|
1.0
|
C5'
|
E:ADP1089
|
4.3
|
15.2
|
1.0
|
OE1
|
E:GLU299
|
4.3
|
26.6
|
1.0
|
OG1
|
E:THR244
|
4.4
|
25.4
|
1.0
|
O2A
|
E:ADP1089
|
4.4
|
25.3
|
1.0
|
ND2
|
E:ASN301
|
4.4
|
15.7
|
1.0
|
O2B
|
E:ADP1089
|
4.5
|
27.8
|
1.0
|
O2
|
E:PO41078
|
4.5
|
23.4
|
1.0
|
CG
|
E:GLN285
|
4.5
|
18.4
|
1.0
|
CD2
|
E:HIS243
|
4.6
|
29.1
|
1.0
|
C3'
|
E:ADP1089
|
5.0
|
20.9
|
1.0
|
|
Manganese binding site 9 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 9 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn1079
b:41.7
occ:1.00
|
O3B
|
E:ADP1090
|
2.0
|
28.2
|
1.0
|
O2A
|
E:ADP1090
|
2.0
|
46.0
|
1.0
|
OE1
|
E:GLN829
|
2.1
|
42.8
|
1.0
|
OE2
|
E:GLU841
|
2.2
|
57.8
|
1.0
|
O
|
E:HOH1602
|
2.4
|
36.5
|
1.0
|
O
|
E:HOH1601
|
2.5
|
41.5
|
1.0
|
CD
|
E:GLN829
|
3.0
|
45.9
|
1.0
|
CD
|
E:GLU841
|
3.2
|
57.2
|
1.0
|
PA
|
E:ADP1090
|
3.2
|
37.1
|
1.0
|
NE2
|
E:GLN829
|
3.4
|
42.5
|
1.0
|
PB
|
E:ADP1090
|
3.4
|
30.9
|
1.0
|
O3A
|
E:ADP1090
|
3.6
|
37.0
|
1.0
|
CG
|
E:GLU841
|
3.8
|
25.9
|
1.0
|
O
|
E:HOH1521
|
3.9
|
25.1
|
1.0
|
OE1
|
E:GLU841
|
4.0
|
47.4
|
1.0
|
C5'
|
E:ADP1090
|
4.2
|
28.5
|
1.0
|
O2B
|
E:ADP1090
|
4.2
|
48.5
|
1.0
|
O5'
|
E:ADP1090
|
4.2
|
40.2
|
1.0
|
OG
|
E:SER789
|
4.3
|
36.1
|
1.0
|
O1A
|
E:ADP1090
|
4.3
|
56.3
|
1.0
|
O3'
|
E:ADP1090
|
4.3
|
29.2
|
1.0
|
O
|
E:HOH1519
|
4.3
|
54.9
|
1.0
|
O1B
|
E:ADP1090
|
4.4
|
48.3
|
1.0
|
CG
|
E:GLN829
|
4.4
|
46.8
|
1.0
|
NE2
|
E:HIS788
|
4.5
|
34.5
|
1.0
|
ND2
|
E:ASN843
|
4.5
|
42.4
|
1.0
|
CE1
|
E:HIS788
|
4.6
|
35.7
|
1.0
|
C3'
|
E:ADP1090
|
4.8
|
23.7
|
1.0
|
|
Manganese binding site 10 out
of 12 in 1t36
Go back to
Manganese Binding Sites List in 1t36
Manganese binding site 10 out
of 12 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn1074
b:31.8
occ:1.00
|
O1
|
G:PO41078
|
1.9
|
17.9
|
1.0
|
OD1
|
G:ASN301
|
2.0
|
29.8
|
1.0
|
O3B
|
G:ADP1089
|
2.2
|
24.4
|
1.0
|
OE1
|
G:GLU299
|
2.3
|
26.0
|
1.0
|
O
|
G:HOH1190
|
2.4
|
26.2
|
1.0
|
OE2
|
G:GLU299
|
2.4
|
27.2
|
1.0
|
CD
|
G:GLU299
|
2.6
|
26.0
|
1.0
|
CG
|
G:ASN301
|
3.0
|
25.1
|
1.0
|
P
|
G:PO41078
|
3.3
|
35.6
|
1.0
|
PB
|
G:ADP1089
|
3.3
|
32.5
|
1.0
|
ND2
|
G:ASN301
|
3.4
|
33.1
|
1.0
|
O1B
|
G:ADP1089
|
3.4
|
27.0
|
1.0
|
O3
|
G:PO41078
|
3.7
|
28.2
|
1.0
|
CB
|
G:MET174
|
3.7
|
27.7
|
1.0
|
MN
|
G:MN1075
|
3.7
|
28.2
|
1.0
|
K
|
G:K1077
|
3.7
|
38.3
|
1.0
|
O
|
G:HOH1170
|
4.0
|
25.2
|
1.0
|
NH2
|
G:ARG303
|
4.1
|
25.4
|
1.0
|
CG
|
G:GLU299
|
4.1
|
22.3
|
1.0
|
O4
|
G:PO41078
|
4.2
|
24.2
|
1.0
|
CA
|
G:MET174
|
4.2
|
30.8
|
1.0
|
O2
|
G:PO41078
|
4.2
|
31.5
|
1.0
|
O
|
G:THR173
|
4.2
|
32.5
|
1.0
|
O3A
|
G:ADP1089
|
4.3
|
25.5
|
1.0
|
NH2
|
G:ARG129
|
4.4
|
29.1
|
1.0
|
O2B
|
G:ADP1089
|
4.4
|
29.2
|
1.0
|
CB
|
G:ASN301
|
4.4
|
28.5
|
1.0
|
O1A
|
G:ADP1089
|
4.6
|
30.4
|
1.0
|
NH1
|
G:ARG129
|
4.8
|
35.1
|
1.0
|
PA
|
G:ADP1089
|
4.9
|
27.2
|
1.0
|
OE1
|
G:GLU127
|
4.9
|
39.1
|
1.0
|
CB
|
G:GLU299
|
5.0
|
23.0
|
1.0
|
|
Reference:
J.B.Thoden,
X.Huang,
J.Kim,
F.M.Raushel,
H.M.Holden.
Long-Range Allosteric Transitions in Carbamoyl Phosphate Synthetase. Protein Sci. V. 13 2398 2004.
ISSN: ISSN 0961-8368
PubMed: 15322282
DOI: 10.1110/PS.04822704
Page generated: Sat Oct 5 12:27:40 2024
|