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Manganese in PDB 1sbe: Soybean Agglutinin From Glycine Max

Protein crystallography data

The structure of Soybean Agglutinin From Glycine Max, PDB code: 1sbe was solved by A.Dessen, L.R.Olsen, D.Gupta, S.Sabesan, J.C.Sacchettini, C.F.Brewer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 99.00 / 2.80
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.300, 143.300, 107.800, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / n/a

Other elements in 1sbe:

The structure of Soybean Agglutinin From Glycine Max also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Soybean Agglutinin From Glycine Max (pdb code 1sbe). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Soybean Agglutinin From Glycine Max, PDB code: 1sbe:

Manganese binding site 1 out of 1 in 1sbe

Go back to Manganese Binding Sites List in 1sbe
Manganese binding site 1 out of 1 in the Soybean Agglutinin From Glycine Max


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Soybean Agglutinin From Glycine Max within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn540

b:28.6
occ:1.00
OE2 A:GLU124 2.2 6.7 1.0
OD1 A:ASP133 2.3 3.1 1.0
NE2 A:HIS138 2.5 18.2 1.0
OD2 A:ASP126 2.6 1.0 1.0
O A:HOH569 2.8 20.3 1.0
CD A:GLU124 2.8 20.3 1.0
O A:HOH574 3.0 11.5 1.0
OE1 A:GLU124 3.1 15.0 1.0
CD2 A:HIS138 3.3 15.0 1.0
OG A:SER148 3.4 9.7 1.0
CE1 A:HIS138 3.5 18.4 1.0
CG A:ASP133 3.6 24.2 1.0
CG A:ASP126 3.8 14.8 1.0
CB A:ASP126 4.1 11.0 1.0
CG A:GLU124 4.1 1.2 1.0
NE1 A:TRP132 4.2 35.4 1.0
O A:ILE146 4.2 19.0 1.0
CD1 A:TRP132 4.3 33.6 1.0
OD2 A:ASP133 4.3 15.1 1.0
CD A:PRO134 4.4 20.6 1.0
CG A:HIS138 4.5 12.6 1.0
CA A:ASP133 4.5 33.4 1.0
CB A:ASP133 4.5 32.4 1.0
ND1 A:HIS138 4.6 16.4 1.0
CB A:SER148 4.6 22.8 1.0
CG2 A:THR151 4.8 18.9 1.0
OD1 A:ASP126 4.9 21.1 1.0
N A:SER148 4.9 27.7 1.0
CA A:CA541 5.0 20.3 1.0

Reference:

L.R.Olsen, A.Dessen, D.Gupta, S.Sabesan, J.C.Sacchettini, C.F.Brewer. X-Ray Crystallographic Studies of Unique Cross-Linked Lattices Between Four Isomeric Biantennary Oligosaccharides and Soybean Agglutinin. Biochemistry V. 36 15073 1997.
ISSN: ISSN 0006-2960
PubMed: 9398234
DOI: 10.1021/BI971828+
Page generated: Tue Dec 15 03:55:33 2020

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