Manganese in the structure of Soybean Agglutinin From Glycine Max (pdb 1sbe)

The binding sites of Manganese atom in the structure of Soybean Agglutinin From Glycine Max (pdb code 1sbe). This binding sites where shown with 5.0 Angstroms radius around Manganese atom. The 1sbe structure was solved by A.DESSEN, L.R.OLSEN, D.GUPTA, S.SABESAN, J.C.SACCHETTINI, C.F.BREWER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 99.0-2.8 Space group P6422 a (A) 143.300 b (A) 143.300 c (A) 107.800 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 21.2 Rfree (%) n/a Manganese Binding Sites: Manganese binding site 1 out of 1 in 1sbe Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1sbe. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu124, A: Asp126, A: Trp132, A: Asp133, A: Pro134, A: His138, A: Ile146, A: Ser148, A: Thr151, A: Ca541, A: Hoh569, A: Hoh574, conact list: Atom Atom Distance (A) Mn OE1 A:Glu124 3.05 Mn OE2 A:Glu124 2.21 Mn CD A:Glu124 2.78 Mn CG A:Glu124 4.10 Mn CB A:Asp126 4.06 Mn OD2 A:Asp126 2.61 Mn OD1 A:Asp126 4.86 Mn CG A:Asp126 3.78 Mn CD1 A:Trp132 4.31 Mn NE1 A:Trp132 4.20 Mn CB A:Asp133 4.48 Mn OD2 A:Asp133 4.35 Mn OD1 A:Asp133 2.31 Mn CG A:Asp133 3.60 Mn CA A:Asp133 4.48 Mn CD A:Pro134 4.39 Mn NE2 A:His138 2.45 Mn ND1 A:His138 4.56 Mn CD2 A:His138 3.26 Mn CE1 A:His138 3.52 Mn CG A:His138 4.45 Mn O A:Ile146 4.21 Mn N A:Ser148 4.94 Mn CB A:Ser148 4.65 Mn OG A:Ser148 3.40 Mn CG2 A:Thr151 4.85 Mn CA A:Ca541 4.97 Mn O A:Hoh569 2.77 Mn O A:Hoh574 2.95 interactive model: