Atomistry » Manganese » PDB 1r2m-1sfy » 1rin
Atomistry »
  Manganese »
    PDB 1r2m-1sfy »
      1rin »

Manganese in PDB 1rin: X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution

Protein crystallography data

The structure of X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution, PDB code: 1rin was solved by J.M.Rini, K.D.Hardman, H.Einspahr, F.L.Suddath, J.P.Carver, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.300, 73.400, 108.500, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / n/a

Other elements in 1rin:

The structure of X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution (pdb code 1rin). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution, PDB code: 1rin:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1rin

Go back to Manganese Binding Sites List in 1rin
Manganese binding site 1 out of 2 in the X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn240

b:25.0
occ:1.00
O A:HOH252 2.1 21.1 1.0
OD2 A:ASP121 2.1 19.6 1.0
O A:HOH251 2.2 17.7 1.0
OE2 A:GLU119 2.2 17.4 1.0
OD1 A:ASP129 2.3 22.9 1.0
NE2 A:HIS136 2.3 20.0 1.0
CE1 A:HIS136 3.0 16.3 1.0
CG A:ASP121 3.1 20.8 1.0
CD A:GLU119 3.2 13.5 1.0
CG A:ASP129 3.3 20.1 1.0
OE1 A:GLU119 3.4 17.7 1.0
CD2 A:HIS136 3.4 23.5 1.0
CB A:ASP121 3.5 13.3 1.0
OD2 A:ASP129 3.8 18.5 1.0
O A:HOH253 4.0 15.9 1.0
OG A:SER146 4.1 25.2 1.0
OD1 A:ASP121 4.1 24.3 1.0
CA A:CA243 4.2 18.6 1.0
ND1 A:HIS136 4.2 18.0 1.0
CB A:ASP129 4.4 19.0 1.0
CG A:HIS136 4.4 18.8 1.0
CG A:GLU119 4.5 15.7 1.0
CD A:PRO130 4.6 35.0 1.0
O A:ILE144 4.6 26.5 1.0
CD1 A:TRP128 4.7 21.6 1.0
CA A:ASP129 4.7 24.4 1.0
NE1 A:TRP128 4.8 24.2 1.0
O A:HOH286 4.8 10.7 0.6

Manganese binding site 2 out of 2 in 1rin

Go back to Manganese Binding Sites List in 1rin
Manganese binding site 2 out of 2 in the X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn240

b:25.3
occ:1.00
O C:HOH341 2.0 8.7 1.0
OD2 C:ASP121 2.1 14.7 1.0
OE2 C:GLU119 2.2 26.5 1.0
O C:HOH342 2.3 16.6 1.0
NE2 C:HIS136 2.3 23.0 1.0
OD1 C:ASP129 2.3 29.9 1.0
CE1 C:HIS136 3.1 22.9 1.0
CG C:ASP121 3.1 16.6 1.0
CD C:GLU119 3.2 24.5 1.0
CG C:ASP129 3.3 26.4 1.0
CD2 C:HIS136 3.3 22.9 1.0
OE1 C:GLU119 3.5 22.1 1.0
CB C:ASP121 3.6 7.9 1.0
OD2 C:ASP129 3.7 31.1 1.0
O C:HOH343 4.1 27.8 1.0
OG C:SER146 4.2 20.9 1.0
ND1 C:HIS136 4.2 21.3 1.0
CA C:CA243 4.2 20.9 1.0
OD1 C:ASP121 4.2 14.9 1.0
CG C:HIS136 4.3 15.1 1.0
CB C:ASP129 4.4 27.5 1.0
CG C:GLU119 4.5 21.4 1.0
O C:ILE144 4.6 24.0 1.0
O C:HOH371 4.6 33.9 0.6
CD C:PRO130 4.6 32.7 1.0
CD1 C:TRP128 4.7 22.8 1.0
CA C:ASP129 4.7 30.0 1.0
NE1 C:TRP128 4.7 23.1 1.0

Reference:

J.M.Rini, K.D.Hardman, H.Einspahr, F.L.Suddath, J.P.Carver. X-Ray Crystal Structure of A Pea Lectin-Trimannoside Complex at 2.6 A Resolution. J.Biol.Chem. V. 268 10126 1993.
ISSN: ISSN 0021-9258
PubMed: 8486683
Page generated: Tue Dec 15 03:55:09 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy