Atomistry » Manganese » PDB 1pj4-1r1o » 1qmo
Atomistry »
  Manganese »
    PDB 1pj4-1r1o »
      1qmo »

Manganese in PDB 1qmo: Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation

Protein crystallography data

The structure of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation, PDB code: 1qmo was solved by T.W.Hamelryck, J.G.Moore, M.Chrispeels, R.Loris, L.Wyns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.50
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 151.360, 151.360, 309.880, 90.00, 90.00, 120.00
R / Rfree (%) 23.2 / 25.2

Other elements in 1qmo:

The structure of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation (pdb code 1qmo). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation, PDB code: 1qmo:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 1qmo

Go back to Manganese Binding Sites List in 1qmo
Manganese binding site 1 out of 4 in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:74.4
occ:1.00
OD1 E:ASP149 2.0 62.4 1.0
OD2 E:ASP140 2.5 48.2 1.0
OE2 E:GLU138 2.7 53.9 1.0
NE2 E:HIS154 2.8 41.0 1.0
CG E:ASP149 3.0 60.2 1.0
OD2 E:ASP149 3.3 57.1 1.0
CD E:GLU138 3.4 49.2 1.0
CG E:ASP140 3.6 48.0 1.0
CE1 E:HIS154 3.7 42.8 1.0
OG E:SER164 3.7 53.2 1.0
OE1 E:GLU138 3.8 51.0 1.0
CD2 E:HIS154 3.8 46.1 1.0
CB E:ASP140 4.0 44.0 1.0
CA A:CA300 4.2 40.7 1.0
O E:ILE162 4.3 52.8 1.0
CD1 E:ILE162 4.3 58.8 1.0
CB E:ASP149 4.3 57.2 1.0
CG E:GLU138 4.5 45.0 1.0
CA E:ASP149 4.7 58.1 1.0
OD1 E:ASP140 4.7 51.2 1.0
ND1 E:HIS154 4.8 40.3 1.0
CG E:HIS154 4.9 45.0 1.0
CG1 E:ILE162 5.0 57.2 1.0

Manganese binding site 2 out of 4 in 1qmo

Go back to Manganese Binding Sites List in 1qmo
Manganese binding site 2 out of 4 in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:74.4
occ:1.00
OD1 F:ASP149 2.0 62.4 1.0
OD2 F:ASP140 2.5 48.2 1.0
OE2 F:GLU138 2.7 53.9 1.0
NE2 F:HIS154 2.8 41.0 1.0
CG F:ASP149 3.0 60.2 1.0
OD2 F:ASP149 3.3 57.1 1.0
CD F:GLU138 3.4 49.2 1.0
CG F:ASP140 3.6 48.0 1.0
CE1 F:HIS154 3.7 42.8 1.0
OG F:SER164 3.7 53.2 1.0
OE1 F:GLU138 3.8 51.0 1.0
CD2 F:HIS154 3.8 46.1 1.0
CB F:ASP140 4.0 44.0 1.0
CA B:CA300 4.2 40.7 1.0
O F:ILE162 4.3 52.8 1.0
CD1 F:ILE162 4.3 58.8 1.0
CB F:ASP149 4.3 57.2 1.0
CG F:GLU138 4.5 45.0 1.0
CA F:ASP149 4.7 58.1 1.0
OD1 F:ASP140 4.7 51.2 1.0
ND1 F:HIS154 4.8 40.3 1.0
CG F:HIS154 4.9 45.0 1.0
CG1 F:ILE162 5.0 57.2 1.0

Manganese binding site 3 out of 4 in 1qmo

Go back to Manganese Binding Sites List in 1qmo
Manganese binding site 3 out of 4 in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn301

b:74.4
occ:1.00
OD1 G:ASP149 2.0 62.4 1.0
OD2 G:ASP140 2.5 48.2 1.0
OE2 G:GLU138 2.7 53.9 1.0
NE2 G:HIS154 2.8 41.0 1.0
CG G:ASP149 3.0 60.2 1.0
OD2 G:ASP149 3.3 57.1 1.0
CD G:GLU138 3.4 49.2 1.0
CG G:ASP140 3.6 48.0 1.0
CE1 G:HIS154 3.7 42.8 1.0
OG G:SER164 3.7 53.2 1.0
OE1 G:GLU138 3.8 51.0 1.0
CD2 G:HIS154 3.8 46.1 1.0
CB G:ASP140 4.0 44.0 1.0
CA C:CA300 4.2 40.7 1.0
O G:ILE162 4.3 52.8 1.0
CD1 G:ILE162 4.3 58.8 1.0
CB G:ASP149 4.3 57.2 1.0
CG G:GLU138 4.5 45.0 1.0
CA G:ASP149 4.6 58.1 1.0
OD1 G:ASP140 4.7 51.2 1.0
ND1 G:HIS154 4.8 40.3 1.0
CG G:HIS154 4.9 45.0 1.0
CG1 G:ILE162 5.0 57.2 1.0

Manganese binding site 4 out of 4 in 1qmo

Go back to Manganese Binding Sites List in 1qmo
Manganese binding site 4 out of 4 in the Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn301

b:74.4
occ:1.00
OD1 H:ASP149 2.0 62.4 1.0
OD2 H:ASP140 2.5 48.2 1.0
OE2 H:GLU138 2.7 53.9 1.0
NE2 H:HIS154 2.8 41.0 1.0
CG H:ASP149 3.0 60.2 1.0
OD2 H:ASP149 3.3 57.1 1.0
CD H:GLU138 3.4 49.2 1.0
CG H:ASP140 3.6 48.0 1.0
CE1 H:HIS154 3.7 42.8 1.0
OG H:SER164 3.7 53.2 1.0
OE1 H:GLU138 3.8 51.0 1.0
CD2 H:HIS154 3.8 46.1 1.0
CB H:ASP140 4.0 44.0 1.0
CA D:CA300 4.2 40.7 1.0
O H:ILE162 4.3 52.8 1.0
CD1 H:ILE162 4.3 58.8 1.0
CB H:ASP149 4.3 57.2 1.0
CG H:GLU138 4.5 45.0 1.0
CA H:ASP149 4.7 58.1 1.0
OD1 H:ASP140 4.7 51.2 1.0
ND1 H:HIS154 4.8 40.3 1.0
CG H:HIS154 4.9 45.0 1.0
CG1 H:ILE162 5.0 57.2 1.0

Reference:

T.W.Hamelryck, J.G.Moore, M.J.Chrispeels, R.Loris, L.Wyns. The Role of Weak Protein-Protein Interactions in Multivalent Lectin-Carbohydrate Binding: Crystal Structure of Cross-Linked Fril J.Mol.Biol. V. 299 875 2000.
ISSN: ISSN 0022-2836
PubMed: 10843844
DOI: 10.1006/JMBI.2000.3785
Page generated: Tue Dec 15 03:54:46 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy