Atomistry » Manganese » PDB 1pj4-1r1o » 1qgq
Atomistry »
  Manganese »
    PDB 1pj4-1r1o »
      1qgq »

Manganese in PDB 1qgq: Udp-Manganese Complex of Spsa From Bacillus Subtilis

Protein crystallography data

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq was solved by S.J.Charnock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 47.330, 142.360, 81.240, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 21

Other elements in 1qgq:

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Udp-Manganese Complex of Spsa From Bacillus Subtilis (pdb code 1qgq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq:

Manganese binding site 1 out of 1 in 1qgq

Go back to Manganese Binding Sites List in 1qgq
Manganese binding site 1 out of 1 in the Udp-Manganese Complex of Spsa From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Udp-Manganese Complex of Spsa From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn300

b:49.4
occ:1.00
O3B A:UDP311 2.0 48.1 1.0
O A:HOH493 2.0 50.1 1.0
O A:HOH418 2.1 41.0 1.0
O1A A:UDP311 2.2 46.1 1.0
O A:HOH564 2.2 60.0 1.0
OD2 A:ASP99 2.6 33.4 1.0
PB A:UDP311 3.2 48.0 1.0
PA A:UDP311 3.4 46.2 1.0
CG A:ASP99 3.5 29.6 1.0
OD1 A:ASP99 3.5 30.0 1.0
O3A A:UDP311 3.5 47.3 1.0
NZ A:LYS13 4.0 30.7 1.0
CE A:LYS13 4.2 31.7 1.0
O A:HOH496 4.2 50.5 1.0
O1B A:UDP311 4.2 48.5 1.0
O2B A:UDP311 4.2 48.6 1.0
O A:HOH525 4.4 54.2 1.0
O2A A:UDP311 4.4 46.7 1.0
O5' A:UDP311 4.4 42.2 1.0
O A:HOH563 4.4 59.9 1.0
C5' A:UDP311 4.8 36.8 1.0
CB A:ASP99 4.9 26.5 1.0

Reference:

S.J.Charnock, G.J.Davies. Structure of the Nucleotide-Diphospho-Sugar Transferase, Spsa From Bacillus Subtilis, in Native and Nucleotide-Complexed Forms. Biochemistry V. 38 6380 1999.
ISSN: ISSN 0006-2960
PubMed: 10350455
DOI: 10.1021/BI990270Y
Page generated: Tue Dec 15 03:54:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy