Manganese in PDB 1qgq: Udp-Manganese Complex of Spsa From Bacillus Subtilis

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq was solved by S.J.Charnock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	47.330, 142.360, 81.240, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 21

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Manganese atom in the Udp-Manganese Complex of Spsa From Bacillus Subtilis (pdb code 1qgq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq:

Manganese binding site 1 out of 1 in the Udp-Manganese Complex of Spsa From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Udp-Manganese Complex of Spsa From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn300 b:49.4 occ:1.00 O3B A:UDP311 2.0 48.1 1.0 O A:HOH493 2.0 50.1 1.0 O A:HOH418 2.1 41.0 1.0 O1A A:UDP311 2.2 46.1 1.0 O A:HOH564 2.2 60.0 1.0 OD2 A:ASP99 2.6 33.4 1.0 PB A:UDP311 3.2 48.0 1.0 PA A:UDP311 3.4 46.2 1.0 CG A:ASP99 3.5 29.6 1.0 OD1 A:ASP99 3.5 30.0 1.0 O3A A:UDP311 3.5 47.3 1.0 NZ A:LYS13 4.0 30.7 1.0 CE A:LYS13 4.2 31.7 1.0 O A:HOH496 4.2 50.5 1.0 O1B A:UDP311 4.2 48.5 1.0 O2B A:UDP311 4.2 48.6 1.0 O A:HOH525 4.4 54.2 1.0 O2A A:UDP311 4.4 46.7 1.0 O5' A:UDP311 4.4 42.2 1.0 O A:HOH563 4.4 59.9 1.0 C5' A:UDP311 4.8 36.8 1.0 CB A:ASP99 4.9 26.5 1.0

S.J.Charnock, G.J.Davies. Structure of the Nucleotide-Diphospho-Sugar Transferase, Spsa From Bacillus Subtilis, in Native and Nucleotide-Complexed Forms. Biochemistry V. 38 6380 1999.
ISSN: ISSN 0006-2960
PubMed: 10350455
DOI: 10.1021/BI990270Y