Atomistry » Manganese » PDB 1pj4-1r1o » 1qdk
Atomistry »
  Manganese »
    PDB 1pj4-1r1o »
      1qdk »

Manganese in PDB 1qdk: The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna

Manganese Binding Sites:

The binding sites of Manganese atom in the The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna (pdb code 1qdk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna, PDB code: 1qdk:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1qdk

Go back to Manganese Binding Sites List in 1qdk
Manganese binding site 1 out of 2 in the The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn13

b:0.0
occ:1.00
H5'' A:DG9 3.9 0.2 1.0
OP1 A:DG9 4.2 0.2 1.0
OP1 B:DG11 4.5 0.6 1.0
C5' A:DG9 5.0 0.1 1.0

Manganese binding site 2 out of 2 in 1qdk

Go back to Manganese Binding Sites List in 1qdk
Manganese binding site 2 out of 2 in the The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The uc(Nmr) Study of Dna Quadruplex Structure, (12MER) Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn14

b:0.0
occ:1.00
H3' A:DG10 3.2 0.2 1.0
H3' B:DG9 3.7 0.2 1.0
O3' A:DG10 3.8 0.1 1.0
OP2 B:DG9 3.8 0.3 1.0
C3' A:DG10 3.9 0.1 1.0
O3' B:DG9 4.2 0.1 1.0
H5' A:DG10 4.2 0.5 1.0
OP1 A:DG11 4.3 0.1 1.0
C3' B:DG9 4.4 0.2 1.0
P A:DG11 4.4 0.2 1.0
H5'' A:DG10 4.4 0.5 1.0
OP2 A:DG11 4.6 0.1 1.0
C5' A:DG10 4.7 0.4 1.0
H5'' B:DG9 4.7 0.3 1.0
C4' A:DG10 4.7 0.2 1.0
H4' A:DG10 4.7 0.3 1.0
OP2 B:DG10 4.9 0.5 1.0
P B:DG10 5.0 0.2 1.0

Reference:

V.M.Marathias, K.Y.Wang, S.Kumar, T.Q.Pham, S.Swaminathan, P.H.Bolton. Determination of the Number and Location of the Manganese Binding Sites of Dna Quadruplexes in Solution By Epr and uc(Nmr) in the Presence and Absence of Thrombin. J.Mol.Biol. V. 260 378 1996.
ISSN: ISSN 0022-2836
PubMed: 8757801
DOI: 10.1006/JMBI.1996.0408
Page generated: Sat Oct 5 12:11:26 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy