Atomistry » Manganese » PDB 1o9i-1pj3 » 1oyy
Atomistry »
  Manganese »
    PDB 1o9i-1pj3 »
      1oyy »

Manganese in PDB 1oyy: Structure of the Recq Catalytic Core Bound to Atp-Gamma-S

Protein crystallography data

The structure of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S, PDB code: 1oyy was solved by D.A.Bernstein, M.C.Zittel, J.L.Keck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.591, 54.534, 78.686, 90.00, 110.78, 90.00
R / Rfree (%) 21 / 29.8

Other elements in 1oyy:

The structure of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S (pdb code 1oyy). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S, PDB code: 1oyy:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1oyy

Go back to Manganese Binding Sites List in 1oyy
Manganese binding site 1 out of 2 in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn525

b:83.7
occ:1.00
OD2 A:ASP35 2.2 51.8 1.0
OE2 A:GLU10 2.3 0.9 1.0
OE1 A:GLU10 2.5 0.2 1.0
CD A:GLU10 2.8 0.8 1.0
OE2 A:GLU31 3.0 78.2 1.0
CG A:ASP35 3.2 51.4 1.0
OD1 A:ASP35 3.5 45.5 1.0
CG A:GLU31 3.6 66.7 1.0
CD A:GLU31 3.7 72.2 1.0
CG A:GLU10 4.3 98.9 1.0
O A:GLU10 4.4 80.2 1.0
CB A:ASP35 4.4 46.3 1.0
OE1 A:GLU31 4.7 69.6 1.0
CB A:GLU31 4.9 61.1 1.0

Manganese binding site 2 out of 2 in 1oyy

Go back to Manganese Binding Sites List in 1oyy
Manganese binding site 2 out of 2 in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn526

b:69.6
occ:1.00
O A:HOH529 2.2 56.6 1.0
O A:HOH568 2.4 74.3 1.0
O2B A:AGS527 2.4 76.1 1.0
O A:HOH528 2.4 66.7 1.0
O3G A:AGS527 3.1 98.5 1.0
PB A:AGS527 3.4 69.8 1.0
O3B A:AGS527 3.5 81.7 1.0
O3A A:AGS527 3.9 78.2 1.0
PG A:AGS527 4.0 94.8 1.0
O1A A:AGS527 4.0 65.1 1.0
OG A:SER54 4.1 65.6 1.0
PA A:AGS527 4.3 73.2 1.0
OD2 A:ASP146 4.4 59.2 1.0
O2A A:AGS527 4.4 68.3 1.0
CB A:LYS53 4.4 50.5 1.0
CE A:LYS53 4.5 83.6 1.0
OD1 A:ASP146 4.5 51.3 1.0
O1B A:AGS527 4.6 75.0 1.0
S1G A:AGS527 4.7 94.6 1.0
N A:SER54 4.8 56.4 1.0
CG A:ASP146 4.8 57.1 1.0
NZ A:LYS53 5.0 84.1 1.0
OE2 A:GLU147 5.0 57.1 1.0

Reference:

D.A.Bernstein, M.C.Zittel, J.L.Keck. High-Resolution Structure of the E. Coli Recq Helicase Catalytic Core Embo J. V. 22 4910 2003.
ISSN: ISSN 0261-4189
PubMed: 14517231
DOI: 10.1093/EMBOJ/CDG500
Page generated: Tue Dec 15 03:54:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy