Atomistry » Manganese » PDB 1o9i-1pj3 » 1ofs
Atomistry »
  Manganese »
    PDB 1o9i-1pj3 »
      1ofs »

Manganese in PDB 1ofs: Pea Lectin-Sucrose Complex

Protein crystallography data

The structure of Pea Lectin-Sucrose Complex, PDB code: 1ofs was solved by M.B.Shevtsov, I.N.Tsygannik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.86 / 1.8
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.831, 60.803, 136.087, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 20.657

Other elements in 1ofs:

The structure of Pea Lectin-Sucrose Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Pea Lectin-Sucrose Complex (pdb code 1ofs). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Pea Lectin-Sucrose Complex, PDB code: 1ofs:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1ofs

Go back to Manganese Binding Sites List in 1ofs
Manganese binding site 1 out of 2 in the Pea Lectin-Sucrose Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Pea Lectin-Sucrose Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1182

b:20.7
occ:1.00
OD2 A:ASP121 2.1 15.4 1.0
OD1 A:ASP129 2.2 19.4 1.0
OE1 A:GLU119 2.2 18.3 1.0
O A:HOH2133 2.3 19.5 1.0
NE2 A:HIS136 2.3 19.0 1.0
CG A:ASP121 3.1 17.9 1.0
CG A:ASP129 3.2 18.2 1.0
CD A:GLU119 3.2 21.0 1.0
CE1 A:HIS136 3.2 23.5 1.0
CD2 A:HIS136 3.3 20.7 1.0
OE2 A:GLU119 3.5 20.6 1.0
CB A:ASP121 3.6 17.5 1.0
OD2 A:ASP129 3.7 18.8 1.0
O A:HOH2070 3.8 15.5 1.0
CA A:CA1183 4.1 19.0 1.0
OG A:SER146 4.2 19.0 1.0
OD1 A:ASP121 4.2 15.1 1.0
CB A:ASP129 4.3 21.6 1.0
ND1 A:HIS136 4.4 22.7 1.0
O A:HOH2094 4.4 26.6 1.0
CG A:HIS136 4.4 21.1 1.0
O A:ILE144 4.5 20.0 1.0
CG A:GLU119 4.6 17.6 1.0
NE1 A:TRP128 4.6 18.5 1.0
CD A:PRO130 4.6 25.6 1.0
CD1 A:TRP128 4.6 20.5 1.0
CA A:ASP129 4.7 23.0 1.0

Manganese binding site 2 out of 2 in 1ofs

Go back to Manganese Binding Sites List in 1ofs
Manganese binding site 2 out of 2 in the Pea Lectin-Sucrose Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Pea Lectin-Sucrose Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn1182

b:19.8
occ:1.00
OE1 C:GLU119 2.2 14.7 1.0
OD2 C:ASP121 2.2 15.5 1.0
OD1 C:ASP129 2.2 17.2 1.0
O C:HOH2145 2.3 19.2 1.0
O C:HOH2144 2.3 19.5 1.0
NE2 C:HIS136 2.3 18.4 1.0
CG C:ASP121 3.2 17.5 1.0
CG C:ASP129 3.2 22.6 1.0
CD C:GLU119 3.2 18.7 1.0
CD2 C:HIS136 3.3 19.2 1.0
CE1 C:HIS136 3.3 15.2 1.0
CB C:ASP121 3.6 15.4 1.0
OE2 C:GLU119 3.6 17.6 1.0
OD2 C:ASP129 3.7 21.6 1.0
O C:HOH2076 3.8 18.6 1.0
CA C:CA1183 4.2 19.0 1.0
OG C:SER146 4.2 20.7 1.0
OD1 C:ASP121 4.3 19.8 1.0
CB C:ASP129 4.3 19.6 1.0
O C:HOH2102 4.4 20.3 1.0
ND1 C:HIS136 4.4 18.9 1.0
CG C:HIS136 4.4 20.9 1.0
O C:ILE144 4.4 19.8 1.0
CG C:GLU119 4.5 14.7 1.0
NE1 C:TRP128 4.6 18.4 1.0
CD C:PRO130 4.7 20.4 1.0
CD1 C:TRP128 4.7 19.2 1.0
CA C:ASP129 4.8 18.7 1.0

Reference:

M.B.Shevtsov, I.N.Tsygannik. Pea Lectin-Sucrose Complex To Be Published.
Page generated: Tue Dec 15 03:53:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy