Chemical elements
  Manganese
    Isotopes
    Energy
    Production
    Application
    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
      1nxd
      1nz5
      1o0r
      1o23
      1o4t
      1o6k
      1o6l
      1o7o
      1o7q
      1o98
      1o99
      1o9i
      1oab
      1oad
      1of2
      1of6
      1ofb
      1ofq
      1ofr
      1ofs
      1og0
      1ogt
      1oi8
      1ols
      1olx
      1omz
      1on1
      1on2
      1on6
      1on8
      1ona
      1ono
      1onp
      1oqm
      1ovr
      1ow2
      1oyw
      1oyy
      1p3d
      1p8m
      1p8n
      1p8o
      1p8p
      1p8q
      1p8r
      1p8s
      1pdz
      1pey
      1phk
      1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima At 1.95 A Resolution (pdb 1o4t)






The binding sites of Manganese atom in the structure of Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima At 1.95 A Resolution (pdb code 1o4t). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1o4t structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.3-1.9
Space groupC121
a (A)89.132
b (A)49.738
c (A)69.547
alpha (°)90.00
beta (°)123.73
gamma (°)90.00
Rfactor (%)16
Rfree (%)21.7


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 1o4t


Manganese binding site 1 out of 2 in 1o4t
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 1o4t
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1o4t. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His61, A: His63, A: Glu68, A: Tyr70, A: His102, A: Oxl400, A: Hoh491,

conact list:


AtomAtomDistance (A)
MnNE2 A:His612.16
MnND1 A:His614.19
MnCD2 A:His613.19
MnCE1 A:His613.05
MnCG A:His614.29
MnNE2 A:His632.02
MnND1 A:His634.07
MnCD2 A:His633.11
MnCE1 A:His632.92
MnCG A:His634.19
MnOE1 A:Glu683.58
MnCB A:Glu684.57
MnOE2 A:Glu682.10
MnCD A:Glu683.14
MnCG A:Glu684.39
MnCE2 A:Tyr704.88
MnCZ A:Tyr704.83
MnOH A:Tyr703.97
MnNE2 A:His1022.16
MnND1 A:His1024.21
MnCD2 A:His1023.24
MnCE1 A:His1023.04
MnCG A:His1024.34
MnO2 A:Oxl4004.21
MnC1 A:Oxl4002.79
MnO1 A:Oxl4004.10
MnO3 A:Oxl4002.09
MnO4 A:Oxl4002.30
MnC2 A:Oxl4002.88
MnO A:Hoh4914.25

interactive model:


Manganese binding site 2 out of 2 in 1o4t


Manganese binding site 2 out of 2 in 1o4t
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 1o4t
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1o4t. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His61, B: His63, B: Glu68, B: Tyr70, B: His102, B: Ile118, B: Oxl401, B: Hoh506,

conact list:


AtomAtomDistance (A)
MnNE2 B:His612.12
MnND1 B:His614.21
MnCD2 B:His613.07
MnCE1 B:His613.11
MnCG B:His614.22
MnNE2 B:His632.05
MnND1 B:His634.12
MnCD2 B:His633.08
MnCE1 B:His632.99
MnCG B:His634.19
MnOE1 B:Glu683.57
MnCB B:Glu684.68
MnOE2 B:Glu682.13
MnCD B:Glu683.16
MnCG B:Glu684.43
MnCE2 B:Tyr704.92
MnCZ B:Tyr704.83
MnOH B:Tyr704.02
MnNE2 B:His1022.23
MnND1 B:His1024.27
MnCD2 B:His1023.31
MnCE1 B:His1023.10
MnCG B:His1024.40
MnCD1 B:Ile1184.98
MnO2 B:Oxl4014.05
MnC1 B:Oxl4012.73
MnO1 B:Oxl4013.97
MnO3 B:Oxl4012.17
MnO4 B:Oxl4012.09
MnC2 B:Oxl4012.73
MnO B:Hoh5064.18

interactive model:




© Copyright 2008-2012 by atomistry.com