Manganese in PDB 1o4t: Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution

The structure of Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution, PDB code: 1o4t was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.29 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.132, 49.738, 69.547, 90.00, 123.73, 90.00
R / Rfree (%)	16 / 21.7

The binding sites of Manganese atom in the Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution (pdb code 1o4t). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution, PDB code: 1o4t:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn300 b:33.9 occ:1.00 NE2 A:HIS63 2.0 28.9 1.0 O3 A:OXL400 2.1 47.1 1.0 OE2 A:GLU68 2.1 38.1 1.0 NE2 A:HIS102 2.2 36.9 1.0 NE2 A:HIS61 2.2 30.7 1.0 O4 A:OXL400 2.3 46.1 1.0 C1 A:OXL400 2.8 52.9 1.0 C2 A:OXL400 2.9 53.3 1.0 CE1 A:HIS63 2.9 31.3 1.0 CE1 A:HIS102 3.0 37.1 1.0 CE1 A:HIS61 3.1 29.2 1.0 CD2 A:HIS63 3.1 31.7 1.0 CD A:GLU68 3.1 34.2 1.0 CD2 A:HIS61 3.2 30.7 1.0 CD2 A:HIS102 3.2 36.2 1.0 OE1 A:GLU68 3.6 36.7 1.0 OH A:TYR70 4.0 33.6 1.0 ND1 A:HIS63 4.1 29.0 1.0 O1 A:OXL400 4.1 54.6 1.0 ND1 A:HIS61 4.2 29.5 1.0 CG A:HIS63 4.2 31.3 1.0 ND1 A:HIS102 4.2 35.5 1.0 O2 A:OXL400 4.2 56.3 1.0 O A:HOH491 4.3 43.1 1.0 CG A:HIS61 4.3 30.6 1.0 CG A:HIS102 4.3 33.4 1.0 CG A:GLU68 4.4 34.1 1.0 CB A:GLU68 4.6 32.0 1.0 CZ A:TYR70 4.8 33.4 1.0 CE2 A:TYR70 4.9 32.6 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A Predicted Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:32.4 occ:1.00 NE2 B:HIS63 2.0 29.3 1.0 O4 B:OXL401 2.1 42.5 1.0 NE2 B:HIS61 2.1 28.0 1.0 OE2 B:GLU68 2.1 39.5 1.0 O3 B:OXL401 2.2 42.0 1.0 NE2 B:HIS102 2.2 32.4 1.0 C1 B:OXL401 2.7 49.6 1.0 C2 B:OXL401 2.7 49.4 1.0 CE1 B:HIS63 3.0 32.7 1.0 CD2 B:HIS61 3.1 30.5 1.0 CD2 B:HIS63 3.1 30.1 1.0 CE1 B:HIS102 3.1 34.1 1.0 CE1 B:HIS61 3.1 30.3 1.0 CD B:GLU68 3.2 37.5 1.0 CD2 B:HIS102 3.3 31.4 1.0 OE1 B:GLU68 3.6 39.5 1.0 O1 B:OXL401 4.0 53.5 1.0 OH B:TYR70 4.0 35.3 1.0 O2 B:OXL401 4.1 56.9 1.0 ND1 B:HIS63 4.1 29.1 1.0 O B:HOH506 4.2 34.5 1.0 CG B:HIS63 4.2 33.2 1.0 ND1 B:HIS61 4.2 29.2 1.0 CG B:HIS61 4.2 31.1 1.0 ND1 B:HIS102 4.3 31.7 1.0 CG B:HIS102 4.4 31.5 1.0 CG B:GLU68 4.4 35.6 1.0 CB B:GLU68 4.7 34.4 1.0 CZ B:TYR70 4.8 34.7 1.0 CE2 B:TYR70 4.9 35.8 1.0 CD1 B:ILE118 5.0 37.3 1.0

R.Schwarzenbacher, F.Von Delft, L.Jaroszewski, P.Abdubek, E.Ambing, T.Biorac, L.S.Brinen, J.M.Canaves, J.Cambell, H.J.Chiu, X.Dai, A.M.Deacon, M.Didonato, M.A.Elsliger, S.Eshagi, R.Floyd, A.Godzik, C.Grittini, S.K.Grzechnik, E.Hampton, C.Karlak, H.E.Klock, E.Koesema, J.S.Kovarik, A.Kreusch, P.Kuhn, S.A.Lesley, I.Levin, D.Mcmullan, T.M.Mcphillips, M.D.Miller, A.Morse, K.Moy, J.Ouyang, R.Page, K.Quijano, A.Robb, G.Spraggon, R.C.Stevens, H.Van Den Bedem, J.Velasquez, J.Vincent, X.Wang, B.West, G.Wolf, Q.Xu, K.O.Hodgson, J.Wooley, I.A.Wilson. Crystal Structure of A Putative Oxalate Decarboxylase (TM1287) From Thermotoga Maritima at 1.95 A Resolution Proteins V. 56 392 2004.
ISSN: ISSN 0887-3585
PubMed: 15211523
DOI: 10.1002/PROT.20016