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Manganese in PDB 1nfz: Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp
Enzymatic activity of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp
All present enzymatic activity of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp:
5.3.3.2;
5.3.3.2;
Protein crystallography data
The structure of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp, PDB code: 1nfz
was solved by
J.Wouters,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 10.00 / 1.97 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 69.100, 72.110, 91.520, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18.1 / 23.7 |
Other elements in 1nfz:
The structure of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
Manganese Binding Sites:
The binding sites of Manganese atom in the Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp
(pdb code 1nfz). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp, PDB code: 1nfz:
Jump to Manganese binding site number: 1; 2;
In total 2 binding sites of Manganese where determined in the Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp, PDB code: 1nfz:
Jump to Manganese binding site number: 1; 2;
Manganese binding site 1 out of 2 in 1nfz
Go back to
Manganese Binding Sites List in 1nfz
Manganese binding site 1 out
of 2 in the Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp within 5.0Å range:
|
Manganese binding site 2 out of 2 in 1nfz
Go back to
Manganese Binding Sites List in 1nfz
Manganese binding site 2 out
of 2 in the Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure and Mechanism of Action of Isopentenylpyrophosphate- Dimethylallylpyrophosphate Isomerase: Complex with Eipp within 5.0Å range:
|
Reference:
J.Wouters,
Y.Oudjama,
S.J.Barkley,
C.Tricot,
V.Stalon,
L.Droogmans,
C.D.Poulter.
Catalytic Mechanism of Escherichia Coli Isopentenyl Diphosphate Isomerase Involves Cys-67, Glu-116, and Tyr-104 As Suggested By Crystal Structures of Complexes with Transition State Analogues and Irreversible Inhibitors J.Biol.Chem. V. 278 11903 2003.
ISSN: ISSN 0021-9258
PubMed: 12540835
DOI: 10.1074/JBC.M212823200
Page generated: Tue Dec 15 03:53:16 2020
ISSN: ISSN 0021-9258
PubMed: 12540835
DOI: 10.1074/JBC.M212823200
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