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Manganese in PDB 1n4w: Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo)

Enzymatic activity of Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo)

All present enzymatic activity of Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo):
1.1.3.6;

Protein crystallography data

The structure of Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo), PDB code: 1n4w was solved by A.Vrielink, P.I.Lario, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.30 / 0.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.343, 72.959, 63.045, 90.00, 105.25, 90.00
R / Rfree (%) 10.3 / 12.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo) (pdb code 1n4w). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo), PDB code: 1n4w:

Manganese binding site 1 out of 1 in 1n4w

Go back to Manganese Binding Sites List in 1n4w
Manganese binding site 1 out of 1 in the Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Atomic Resolution Structure of Cholesterol Oxidase @ pH 7.3 (Streptomyces Sp. Sa-Coo) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn512

b:16.5
occ:0.25
O A:HOH1013 1.1 23.0 0.5
HE2 A:HIS159 1.5 17.1 0.8
O A:HOH1300 2.0 12.8 0.2
O A:HOH1318 2.2 24.1 0.2
NE2 A:HIS159 2.3 14.3 1.0
CD2 A:HIS159 3.1 12.7 1.0
HD2 A:HIS159 3.1 15.2 1.0
HD21 A:ASN152 3.2 24.1 1.0
CE1 A:HIS159 3.4 12.7 1.0
HE1 A:HIS159 3.7 15.2 1.0
O A:HOH821 3.7 13.0 0.5
ND2 A:ASN152 4.1 20.1 1.0
CG A:HIS159 4.3 10.7 1.0
O A:HOH1301 4.3 19.8 0.5
HG11 A:VAL157 4.4 14.0 1.0
ND1 A:HIS159 4.4 12.1 1.0
OD1 A:ASN152 4.4 15.1 1.0
HA A:ASN158 4.6 10.6 1.0
HD22 A:ASN152 4.7 24.1 1.0
CG A:ASN152 4.7 13.6 1.0
O A:VAL157 4.8 10.3 1.0
HB A:VAL157 4.9 10.7 1.0
HG12 A:VAL157 5.0 14.0 1.0

Reference:

A.Y.Lyubimov, P.I.Lario, I.Moustafa, A.Vrielink. Atomic Resolution Crystallography Reveals How Changes in pH Shape the Protein Microenvironment Nat.Chem.Biol. V. 2 259 2006.
ISSN: ISSN 1552-4450
PubMed: 16604066
DOI: 10.1038/NCHEMBIO784
Page generated: Sat Oct 5 11:50:01 2024

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