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Manganese in PDB 1n3o: Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose

Protein crystallography data

The structure of Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose, PDB code: 1n3o was solved by R.Loris, A.Imberty, S.Beeckmans, E.Van Driessche, J.S.Read, J.Bouckaert, H.De Greve, L.Buts, L.Wyns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.760, 83.550, 122.930, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21

Other elements in 1n3o:

The structure of Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose (pdb code 1n3o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose, PDB code: 1n3o:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1n3o

Go back to Manganese Binding Sites List in 1n3o
Manganese binding site 1 out of 2 in the Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn271

b:17.8
occ:1.00
O A:HOH1005 2.1 13.5 1.0
OD1 A:ASP141 2.2 17.1 1.0
OE1 A:GLU128 2.2 14.2 1.0
OD2 A:ASP130 2.2 13.4 1.0
O A:HOH1004 2.4 14.5 1.0
NE2 A:HIS146 2.4 17.3 1.0
CG A:ASP141 3.1 15.5 1.0
CD A:GLU128 3.2 18.0 1.0
CG A:ASP130 3.2 15.2 1.0
CE1 A:HIS146 3.4 17.2 1.0
CD2 A:HIS146 3.4 18.1 1.0
OE2 A:GLU128 3.5 19.5 1.0
OD2 A:ASP141 3.5 19.2 1.0
CB A:ASP130 3.5 15.9 1.0
O A:HOH1003 3.9 15.7 1.0
CA A:CA272 4.1 15.4 1.0
CB A:ASP141 4.3 18.7 1.0
OD1 A:ASP130 4.3 16.7 1.0
OG A:SER156 4.4 17.2 1.0
ND1 A:HIS146 4.5 18.9 1.0
O A:HOH1006 4.5 23.6 1.0
CD1 A:TRP140 4.5 20.6 1.0
NE1 A:TRP140 4.5 22.4 1.0
CG A:GLU128 4.5 12.9 1.0
O A:ILE154 4.6 17.9 1.0
CG A:HIS146 4.6 20.3 1.0
CA A:ASP141 4.8 21.5 1.0
CD A:PRO142 4.9 21.7 1.0

Manganese binding site 2 out of 2 in 1n3o

Go back to Manganese Binding Sites List in 1n3o
Manganese binding site 2 out of 2 in the Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Pterocarcpus Angolensis Lectin in Complex with Alpha-Methyl Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn273

b:17.2
occ:1.00
OD1 B:ASP141 2.2 15.8 1.0
OD1 B:ASP130 2.2 10.1 1.0
O B:HOH1112 2.3 13.1 1.0
OE1 B:GLU128 2.3 10.4 1.0
O B:HOH1113 2.3 12.1 1.0
NE2 B:HIS146 2.4 11.2 1.0
CG B:ASP141 3.1 15.0 1.0
CE1 B:HIS146 3.2 15.3 1.0
CG B:ASP130 3.2 14.7 1.0
CD B:GLU128 3.3 12.9 1.0
CD2 B:HIS146 3.4 12.3 1.0
OE2 B:GLU128 3.5 12.5 1.0
OD2 B:ASP141 3.5 19.1 1.0
CB B:ASP130 3.6 15.0 1.0
O B:HOH1111 3.9 15.3 1.0
CA B:CA274 4.2 15.4 1.0
CB B:ASP141 4.3 16.6 1.0
OD2 B:ASP130 4.4 14.0 1.0
OG B:SER156 4.4 15.0 1.0
ND1 B:HIS146 4.4 13.2 1.0
NE1 B:TRP140 4.5 21.2 1.0
O B:HOH1114 4.5 23.0 1.0
CG B:HIS146 4.5 14.1 1.0
CD1 B:TRP140 4.5 18.2 1.0
O B:ILE154 4.5 15.6 1.0
CG B:GLU128 4.6 10.9 1.0
CA B:ASP141 4.8 17.9 1.0
CD B:PRO142 5.0 20.0 1.0

Reference:

R.Loris, A.Imberty, S.Beeckmans, E.Van Driessche, J.S.Read, J.Bouckaert, H.De Greve, L.Buts, L.Wyns. Crystal Structure of Pterocarpus Angolensis Lectin in Complex with Glucose, Sucrose, and Turanose J.Biol.Chem. V. 278 16297 2003.
ISSN: ISSN 0021-9258
PubMed: 12595543
DOI: 10.1074/JBC.M211148200
Page generated: Sat Oct 5 11:48:42 2024

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