Manganese in PDB 1n1h: Initiation Complex of Polymerase LAMBDA3 From Reovirus

The structure of Initiation Complex of Polymerase LAMBDA3 From Reovirus, PDB code: 1n1h was solved by Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.71 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.883, 85.013, 249.294, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 26.8

The binding sites of Manganese atom in the Initiation Complex of Polymerase LAMBDA3 From Reovirus (pdb code 1n1h). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Initiation Complex of Polymerase LAMBDA3 From Reovirus, PDB code: 1n1h:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Initiation Complex of Polymerase LAMBDA3 From Reovirus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Initiation Complex of Polymerase LAMBDA3 From Reovirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1301 b:32.7 occ:1.00 O2B A:CH11291 2.0 67.6 1.0 OD2 A:ASP734 2.1 33.3 1.0 O A:ILE586 2.4 29.0 1.0 OD1 A:ASP585 2.7 34.5 1.0 O3G A:CH11291 3.0 68.8 1.0 O1A A:CH11291 3.1 62.1 1.0 PB A:CH11291 3.3 66.8 1.0 CG A:ASP734 3.3 32.5 1.0 OD2 A:ASP585 3.3 31.9 1.0 O1G A:CH11291 3.3 69.7 1.0 CG A:ASP585 3.3 33.9 1.0 C A:ILE586 3.4 28.3 1.0 MN A:MN1302 3.4 35.6 1.0 O3B A:CH11291 3.7 68.2 1.0 PG A:CH11291 3.9 69.6 1.0 OD1 A:ASP734 3.9 35.0 1.0 CA A:SER587 3.9 29.3 1.0 N A:SER587 4.1 28.1 1.0 O3A A:CH11291 4.1 65.1 1.0 PA A:CH11291 4.1 63.1 1.0 N A:ILE586 4.2 28.6 1.0 CA A:ILE586 4.4 28.4 1.0 CB A:ASP734 4.4 28.9 1.0 O1B A:CH11291 4.5 66.2 1.0 N A:ALA588 4.5 29.8 1.0 C A:SER587 4.7 30.2 1.0 C5' A:CH11291 4.7 65.5 1.0 CB A:CYS589 4.7 30.9 1.0 CB A:ASP585 4.8 32.5 1.0 N A:CYS589 4.8 30.1 1.0 O5' A:CH11291 4.8 63.9 1.0 C A:ASP585 4.9 30.1 1.0 CB A:SER587 5.0 28.4 1.0

Manganese binding site 2 out of 2 in the Initiation Complex of Polymerase LAMBDA3 From Reovirus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Initiation Complex of Polymerase LAMBDA3 From Reovirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1302 b:35.6 occ:1.00 OD2 A:ASP585 2.2 31.9 1.0 OD1 A:ASP734 2.3 35.0 1.0 O1A A:CH11291 2.3 62.1 1.0 OD1 A:ASP735 2.5 33.8 1.0 CG A:ASP734 3.0 32.5 1.0 OD2 A:ASP734 3.1 33.3 1.0 MN A:MN1301 3.4 32.7 1.0 CG A:ASP585 3.4 33.9 1.0 PA A:CH11291 3.5 63.1 1.0 O5' A:CH11291 3.6 63.9 1.0 CG A:ASP735 3.8 31.1 1.0 OD1 A:ASP585 4.0 34.5 1.0 C5' A:CH11291 4.0 65.5 1.0 O2A A:CH11291 4.4 63.3 1.0 C A:ASP734 4.4 27.1 1.0 O2B A:CH11291 4.4 67.6 1.0 CB A:ASP734 4.4 28.9 1.0 N A:ASP735 4.4 27.0 1.0 O A:ASP734 4.4 27.6 1.0 CB A:ASP735 4.5 28.7 1.0 CB A:ASP585 4.6 32.5 1.0 CA A:ASP735 4.7 26.1 1.0 OD2 A:ASP735 4.7 33.5 1.0 O3A A:CH11291 4.7 65.1 1.0 CA A:ASP734 4.8 27.7 1.0 O3G A:CH11291 4.9 68.8 1.0

Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison. Rna Synthesis in A Cage--Structural Studies of Reovirus Polymerase [Lambda] 3 Cell(Cambridge,Mass.) V. 111 733 2002.
ISSN: ISSN 0092-8674
PubMed: 12464184
DOI: 10.1016/S0092-8674(02)01110-8