Chemical elements
  Manganese
    Isotopes
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    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
      1mb0
      1mhp
      1mih
      1mjh
      1mm8
      1mng
      1mnp
      1mq9
      1mqw
      1mr2
      1mrr
      1msd
      1muc
      1muh
      1mur
      1mus
      1muw
      1mvo
      1mvq
      1mwh
      1n0j
      1n0n
      1n1h
      1n1p
      1n2h
      1n35
      1n38
      1n3o
      1n3p
      1n3q
      1n47
      1n4w
      1n51
      1n8f
      1nb6
      1nb7
      1ncy
      1nfs
      1nfz
      1nhx
      1nkh
      1nki
      1nls
      1nnr
      1nom
      1noy
      1nr0
      1nu5
      1nvk
      1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of The 0.86 Angstrom Structure of Xylose Isomerase (pdb 1muw)






The binding sites of Manganese atom in the structure of The 0.86 Angstrom Structure of Xylose Isomerase (pdb code 1muw). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1muw structure was solved by T.D.FENN, D.RINGE, G.A.PETSKO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-0.9
Space groupI222
a (A)85.906
b (A)92.883
c (A)98.321
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)12.5
Rfree (%)14.3


Manganese Binding Sites:

Manganese binding site 1 out of 4 in 1muw


Manganese binding site 1 out of 4 in 1muw
Click to enlarge
stereopicture of Manganese binding site 1 out of 4 in 1muw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1muw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys182, A: Glu216, A: Gly218, A: His219, A: Asn246, A: Asp254, A: Asp256, A: Mn451, A: Mn452, A: Oh455, A: Hoh476, A: Hoh589, A: Hoh788, A: Hoh879,

conact list:


AtomAtomDistance (A)
MnHZ3 A:Lys1824.48
MnHE3 A:Lys1824.02
MnHD2 A:Lys1824.87
MnCE A:Lys1824.85
MnNZ A:Lys1824.97
MnHZ1 A:Lys1824.95
MnOE1 A:Glu2163.20
MnHG3 A:Glu2164.82
MnHB3 A:Glu2164.94
MnOE2 A:Glu2161.94
MnCD A:Glu2162.90
MnCG A:Glu2164.23
MnHG2 A:Glu2164.29
MnHA3 A:Gly2184.89
MnCD2 A:His2192.98
MnCG A:His2194.18
MnHD2 A:His2192.98
MnNE2 A:His2192.34
MnHE1 A:His2193.72
MnND1 A:His2194.40
MnH A:His2194.92
MnCE1 A:His2193.39
MnHD21 A:Asn2463.35
MnHD22 A:Asn2464.00
MnND2 A:Asn2464.01
MnHB2 A:Asp2544.31
MnHB2 A:Asp2544.04
MnCB A:Asp2543.94
MnCB A:Asp2543.79
MnHB3 A:Asp2544.30
MnHB3 A:Asp2544.12
MnHA A:Asp2544.87
MnHA A:Asp2544.97
MnOD2 A:Asp2541.97
MnOD2 A:Asp2541.62
MnOD1 A:Asp2542.32
MnOD1 A:Asp2542.54
MnCG A:Asp2542.45
MnCG A:Asp2542.38
MnCA A:Asp2544.91
MnCA A:Asp2544.92
MnCB A:Asp2564.61
MnCB A:Asp2564.68
MnHA A:Asp2564.62
MnHA A:Asp2564.64
MnOD2 A:Asp2563.35
MnOD2 A:Asp2563.55
MnH A:Asp2564.65
MnH A:Asp2564.64
MnOD1 A:Asp2562.30
MnOD1 A:Asp2562.29
MnCG A:Asp2563.17
MnCG A:Asp2563.26
MnMN A:Mn4510.00
MnMN A:Mn4511.11
MnMN A:Mn4510.86
MnMN A:Mn4524.97
MnO A:Oh4552.20
MnHO A:Oh4552.33
MnO A:Hoh4764.07
MnO A:Hoh5893.50
MnO A:Hoh7883.97
MnO A:Hoh8793.89

interactive model:


Manganese binding site 2 out of 4 in 1muw


Manganese binding site 2 out of 4 in 1muw
Click to enlarge
stereopicture of Manganese binding site 2 out of 4 in 1muw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1muw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys182, A: Glu216, A: His219, A: Asn246, A: Asp254, A: Asp256, A: Asp286, A: Lys288, A: Mn451, A: Mn452, A: Oh455, A: Hoh476, A: Hoh589, A: Hoh788, A: Hoh793, A: Hoh879,

conact list:


AtomAtomDistance (A)
MnHZ3 A:Lys1824.96
MnHE3 A:Lys1824.78
MnOE1 A:Glu2163.11
MnHG3 A:Glu2164.78
MnOE2 A:Glu2162.10
MnCD A:Glu2162.95
MnCG A:Glu2164.35
MnHG2 A:Glu2164.49
MnCD2 A:His2193.78
MnCG A:His2194.93
MnHD2 A:His2193.80
MnNE2 A:His2193.06
MnHE1 A:His2194.17
MnCE1 A:His2193.98
MnHD21 A:Asn2463.17
MnHD22 A:Asn2463.50
MnND2 A:Asn2463.68
MnCG A:Asn2464.97
MnHB2 A:Asp2544.89
MnHB2 A:Asp2544.66
MnCB A:Asp2544.39
MnCB A:Asp2544.27
MnHB3 A:Asp2544.63
MnHB3 A:Asp2544.50
MnOD2 A:Asp2542.30
MnOD2 A:Asp2542.09
MnOD1 A:Asp2542.87
MnOD1 A:Asp2542.85
MnCG A:Asp2542.93
MnCG A:Asp2542.83
MnHB2 A:Asp2564.47
MnHB2 A:Asp2564.68
MnN A:Asp2564.74
MnN A:Asp2564.74
MnCB A:Asp2563.96
MnCB A:Asp2564.03
MnHB3 A:Asp2564.46
MnHB3 A:Asp2564.35
MnHA A:Asp2564.16
MnHA A:Asp2564.19
MnOD2 A:Asp2562.60
MnOD2 A:Asp2562.95
MnH A:Asp2564.51
MnH A:Asp2564.49
MnOD1 A:Asp2561.75
MnOD1 A:Asp2561.68
MnCG A:Asp2562.46
MnCG A:Asp2562.61
MnCA A:Asp2564.53
MnCA A:Asp2564.55
MnO A:Asp2864.44
MnHB3 A:Asp2864.85
MnOD2 A:Asp2864.62
MnOD1 A:Asp2864.81
MnCG A:Asp2864.71
MnHZ2 A:Lys2884.40
MnMN A:Mn4510.86
MnMN A:Mn4511.54
MnMN A:Mn4510.00
MnMN A:Mn4524.79
MnO A:Oh4551.74
MnHO A:Oh4552.17
MnO A:Hoh4764.21
MnO A:Hoh5893.78
MnO A:Hoh7883.88
MnO A:Hoh7934.95
MnO A:Hoh8793.59

interactive model:


Manganese binding site 3 out of 4 in 1muw


Manganese binding site 3 out of 4 in 1muw
Click to enlarge
stereopicture of Manganese binding site 3 out of 4 in 1muw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1muw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu180, A: Lys182, A: Glu216, A: His219, A: Asn246, A: Asp254, A: Asp256, A: Asp286, A: Mn451, A: Mn452, A: Oh455, A: Hoh589, A: Hoh788, A: Hoh793, A: Hoh879,

conact list:


AtomAtomDistance (A)
MnOE2 A:Glu1804.77
MnOE2 A:Glu1804.57
MnHG3 A:Lys1824.91
MnHZ3 A:Lys1823.88
MnCD A:Lys1824.70
MnHE3 A:Lys1823.69
MnHD2 A:Lys1824.05
MnCE A:Lys1824.40
MnNZ A:Lys1824.49
MnHZ1 A:Lys1824.65
MnOE1 A:Glu2162.97
MnHB3 A:Glu2164.81
MnOE2 A:Glu2162.47
MnCD A:Glu2163.03
MnCG A:Glu2164.43
MnHG2 A:Glu2164.68
MnCD2 A:His2192.85
MnHD1 A:His2194.57
MnCG A:His2193.91
MnHD2 A:His2193.16
MnNE2 A:His2191.76
MnHE1 A:His2192.76
MnND1 A:His2193.81
MnCE1 A:His2192.61
MnHD21 A:Asn2464.22
MnHD22 A:Asn2464.82
MnND2 A:Asn2464.87
MnHB2 A:Asp2544.53
MnHB2 A:Asp2544.31
MnCB A:Asp2544.33
MnCB A:Asp2544.22
MnHB3 A:Asp2544.58
MnHB3 A:Asp2544.41
MnOD2 A:Asp2542.19
MnOD2 A:Asp2541.94
MnOD1 A:Asp2543.12
MnOD1 A:Asp2543.50
MnCG A:Asp2542.97
MnCG A:Asp2543.03
MnOD2 A:Asp2563.78
MnOD2 A:Asp2564.08
MnOD1 A:Asp2563.25
MnOD1 A:Asp2563.20
MnCG A:Asp2563.92
MnCG A:Asp2564.03
MnOD2 A:Asp2864.68
MnMN A:Mn4511.11
MnMN A:Mn4510.00
MnMN A:Mn4511.54
MnMN A:Mn4524.45
MnO A:Oh4551.79
MnHO A:Oh4551.53
MnO A:Hoh5892.65
MnO A:Hoh7883.03
MnO A:Hoh7884.10
MnO A:Hoh7934.18
MnO A:Hoh8793.96

interactive model:


Manganese binding site 4 out of 4 in 1muw


Manganese binding site 4 out of 4 in 1muw
Click to enlarge
stereopicture of Manganese binding site 4 out of 4 in 1muw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1muw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Trp15, A: Glu180, A: Asn214, A: Glu216, A: His219, A: Asp244, A: Asp286, A: Mn451, A: Oh455, A: Hoh528, A: Hoh660, A: Hoh775, A: Hoh788,

conact list:


AtomAtomDistance (A)
MnHZ2 A:Trp154.77
MnOE1 A:Glu1803.41
MnOE1 A:Glu1803.18
MnHG3 A:Glu1804.20
MnHG3 A:Glu1804.14
MnOE2 A:Glu1801.92
MnOE2 A:Glu1802.24
MnCD A:Glu1802.94
MnCD A:Glu1802.91
MnCG A:Glu1804.17
MnCG A:Glu1804.12
MnHG2 A:Glu1804.49
MnHG2 A:Glu1804.47
MnHD21 A:Asn2144.29
MnHD22 A:Asn2144.63
MnND2 A:Asn2144.73
MnHB2 A:Glu2163.06
MnOE1 A:Glu2162.04
MnHG3 A:Glu2163.83
MnCB A:Glu2163.83
MnHB3 A:Glu2164.22
MnOE2 A:Glu2164.24
MnCD A:Glu2163.18
MnCG A:Glu2163.82
MnHG2 A:Glu2164.77
MnHD1 A:His2194.93
MnNE2 A:His2194.80
MnHE1 A:His2193.83
MnND1 A:His2194.84
MnCE1 A:His2194.26
MnHB2 A:Asp2443.54
MnCB A:Asp2443.58
MnHB3 A:Asp2443.36
MnOD2 A:Asp2442.05
MnOD1 A:Asp2444.17
MnCG A:Asp2443.11
MnHB2 A:Asp2863.34
MnCB A:Asp2863.38
MnHB3 A:Asp2863.09
MnOD2 A:Asp2862.14
MnOD1 A:Asp2864.22
MnCG A:Asp2863.09
MnCA A:Asp2864.88
MnMN A:Mn4514.97
MnMN A:Mn4514.45
MnMN A:Mn4514.79
MnO A:Oh4553.93
MnHO A:Oh4553.67
MnO A:Hoh5283.72
MnO A:Hoh6604.08
MnO A:Hoh7754.00
MnO A:Hoh7882.84
MnO A:Hoh7883.98

interactive model:




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