Manganese in PDB 1lzj: Glycosyltransferase B + Udp + H Antigen Acceptor

The structure of Glycosyltransferase B + Udp + H Antigen Acceptor, PDB code: 1lzj was solved by S.I.Patenaude, N.O.L.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.32
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.740, 149.480, 79.530, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 20

The structure of Glycosyltransferase B + Udp + H Antigen Acceptor also contains other interesting chemical elements:

Mercury

(Hg)

4 atoms

The binding sites of Manganese atom in the Glycosyltransferase B + Udp + H Antigen Acceptor (pdb code 1lzj). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Glycosyltransferase B + Udp + H Antigen Acceptor, PDB code: 1lzj:

Manganese binding site 1 out of 1 in the Glycosyltransferase B + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Glycosyltransferase B + Udp + H Antigen Acceptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn406 b:22.2 occ:1.00 O A:HOH708 2.2 25.0 1.0 O1A A:UDP475 2.2 20.3 1.0 O3B A:UDP475 2.2 24.7 1.0 OD2 A:ASP211 2.3 20.6 1.0 OD2 A:ASP213 2.4 19.2 1.0 OD1 A:ASP213 2.6 22.9 1.0 CG A:ASP213 2.9 17.5 1.0 PB A:UDP475 3.3 21.4 1.0 CG A:ASP211 3.3 17.4 1.0 PA A:UDP475 3.4 20.5 1.0 O3A A:UDP475 3.5 21.9 1.0 CB A:ASP211 3.6 15.1 1.0 O3' A:UDP475 3.8 21.1 1.0 O2B A:UDP475 4.0 24.6 1.0 O5' A:UDP475 4.2 20.6 1.0 O A:HOH693 4.3 28.2 1.0 O A:HOH784 4.3 38.9 1.0 C5' A:UDP475 4.4 20.5 1.0 CB A:ASP213 4.4 17.2 1.0 OD1 A:ASP211 4.4 19.6 1.0 C3' A:UDP475 4.5 20.7 1.0 O2A A:UDP475 4.5 21.3 1.0 O1B A:UDP475 4.6 25.1 1.0 O A:HOH677 4.7 26.5 1.0 O A:ASP213 4.8 14.7 1.0 C4' A:UDP475 4.9 20.9 1.0 SD A:MET214 4.9 15.8 1.0

S.I.Patenaude, N.O.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans. The Structural Basis For Specificity in Human Abo(H) Blood Group Biosynthesis. Nat.Struct.Biol. V. 9 685 2002.
ISSN: ISSN 1072-8368
PubMed: 12198488
DOI: 10.1038/NSB832