Manganese in PDB 1log: X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution

The structure of X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution, PDB code: 1log was solved by Y.Bourne, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	137.100, 63.300, 54.600, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / n/a

The structure of X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution (pdb code 1log). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution, PDB code: 1log:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn562 b:16.5 occ:1.00 O A:HOH748 1.5 36.9 1.0 O A:HOH747 1.6 27.7 1.0 OD2 A:ASP121 2.1 19.1 1.0 OD1 A:ASP129 2.2 12.4 1.0 OE2 A:GLU119 2.4 7.8 1.0 NE2 A:HIS136 2.7 9.6 1.0 CG A:ASP121 3.2 16.0 1.0 CD A:GLU119 3.3 6.7 1.0 CG A:ASP129 3.3 9.0 1.0 OE1 A:GLU119 3.4 9.6 1.0 CD2 A:HIS136 3.5 10.4 1.0 CE1 A:HIS136 3.7 11.8 1.0 CB A:ASP121 3.7 10.4 1.0 O A:HOH746 3.8 47.0 1.0 OD2 A:ASP129 3.8 9.5 1.0 OD1 A:ASP121 4.2 18.5 1.0 OG A:SER146 4.2 11.2 1.0 O A:HOH749 4.3 14.8 1.0 O A:ILE144 4.4 9.9 1.0 CB A:ASP129 4.5 11.7 1.0 CA A:CA561 4.5 16.9 1.0 CD1 A:TRP128 4.6 7.0 1.0 CG A:GLU119 4.7 2.0 1.0 CG A:HIS136 4.7 7.7 1.0 ND1 A:HIS136 4.7 11.2 1.0 NE1 A:TRP128 4.8 4.7 1.0 CA A:ASP129 4.8 11.0 1.0 CD A:PRO130 4.9 16.5 1.0

Manganese binding site 2 out of 2 in the X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn572 b:17.6 occ:1.00 O C:HOH765 1.5 30.3 1.0 O C:HOH764 1.5 25.9 1.0 OE2 C:GLU119 2.2 4.9 1.0 OD2 C:ASP121 2.2 10.7 1.0 OD1 C:ASP129 2.4 8.6 1.0 NE2 C:HIS136 2.6 7.2 1.0 CD C:GLU119 3.1 7.9 1.0 CG C:ASP121 3.2 15.4 1.0 OE1 C:GLU119 3.2 9.3 1.0 CG C:ASP129 3.4 8.4 1.0 CD2 C:HIS136 3.5 10.8 1.0 CE1 C:HIS136 3.6 9.1 1.0 CB C:ASP121 3.7 11.0 1.0 OD2 C:ASP129 3.9 9.1 1.0 OG C:SER146 3.9 15.2 1.0 O C:HOH763 4.0 8.9 1.0 O C:HOH676 4.2 19.7 1.0 OD1 C:ASP121 4.3 15.0 1.0 CG C:GLU119 4.5 2.5 1.0 O C:ILE144 4.5 13.1 1.0 CA C:CA571 4.5 6.0 1.0 CB C:ASP129 4.5 11.9 1.0 CD1 C:TRP128 4.6 9.6 1.0 NE1 C:TRP128 4.6 8.0 1.0 CG C:HIS136 4.7 11.0 1.0 ND1 C:HIS136 4.7 13.9 1.0 CD C:PRO130 4.8 15.6 1.0 CA C:ASP129 4.8 11.3 1.0

Y.Bourne, P.Rouge, C.Cambillau. X-Ray Structure of A (Alpha-Man(1-3)Beta-Man(1-4)Glcnac)-Lectin Complex at 2.1-A Resolution. the Role of Water in Sugar-Lectin Interaction. J.Biol.Chem. V. 265 18161 1990.
ISSN: ISSN 0021-9258
PubMed: 2211692