Manganese in PDB 1lof: X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution

The structure of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution, PDB code: 1lof was solved by Y.Bourne, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	78.300, 75.400, 103.900, 90.00, 92.00, 90.00
R / Rfree (%)	19 / n/a

The structure of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution (pdb code 1lof). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution, PDB code: 1lof:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn228 b:38.2 occ:1.00 O A:HOH747 1.5 66.2 1.0 O A:HOH746 1.5 44.9 1.0 OD2 A:ASP121 2.0 33.4 1.0 OD1 A:ASP129 2.3 36.2 1.0 OE2 A:GLU119 2.4 15.7 1.0 NE2 A:HIS136 2.9 26.1 1.0 CG A:ASP121 3.1 30.9 1.0 CD A:GLU119 3.3 19.0 1.0 OE1 A:GLU119 3.4 21.9 1.0 CG A:ASP129 3.4 31.8 1.0 CD2 A:HIS136 3.6 24.1 1.0 CB A:ASP121 3.8 26.4 1.0 CE1 A:HIS136 3.9 26.0 1.0 OG A:SER146 3.9 30.0 1.0 O A:HOH745 4.0 30.6 1.0 OD2 A:ASP129 4.0 31.3 1.0 OD1 A:ASP121 4.1 30.1 1.0 O A:ILE144 4.3 28.7 1.0 CB A:ASP129 4.5 30.9 1.0 CD1 A:TRP128 4.5 19.8 1.0 CG A:GLU119 4.7 18.0 1.0 NE1 A:TRP128 4.7 19.3 1.0 CG A:HIS136 4.8 23.7 1.0 CA A:ASP129 4.8 31.7 1.0 ND1 A:HIS136 4.9 30.9 1.0 CD A:PRO130 5.0 33.1 1.0

Manganese binding site 2 out of 2 in the X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex at 2.3 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn458 b:44.7 occ:1.00 O C:HOH684 1.5 66.2 1.0 O C:HOH683 1.5 85.8 1.0 O C:HOH641 1.6 64.1 1.0 OD1 C:ASP129 2.3 37.6 1.0 OD2 C:ASP121 2.4 22.7 1.0 NE2 C:HIS136 2.8 25.0 1.0 OE1 C:GLU119 3.0 30.4 1.0 CD2 C:HIS136 3.5 24.9 1.0 CG C:ASP121 3.5 24.3 1.0 CG C:ASP129 3.5 35.7 1.0 OE2 C:GLU119 3.6 25.4 1.0 CD C:GLU119 3.6 25.6 1.0 OG C:SER146 3.7 26.1 1.0 CE1 C:HIS136 3.9 27.4 1.0 CB C:ASP121 4.0 22.6 1.0 O C:ILE144 4.1 37.6 1.0 O C:HOH682 4.1 27.4 1.0 OD2 C:ASP129 4.2 33.0 1.0 CD1 C:TRP128 4.5 32.6 1.0 CB C:ASP129 4.6 36.0 1.0 OD1 C:ASP121 4.6 25.1 1.0 NE1 C:TRP128 4.7 35.3 1.0 CD C:PRO130 4.7 37.2 1.0 CA C:ASP129 4.7 40.3 1.0 CG C:HIS136 4.8 26.0 1.0 ND1 C:HIS136 4.9 34.5 1.0 CG C:GLU119 4.9 24.3 1.0

Y.Bourne, P.Rouge, C.Cambillau. X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex Refined at 2.3-A Resolution. J.Biol.Chem. V. 267 197 1992.
ISSN: ISSN 0021-9258
PubMed: 1730588