Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
      1kx4
      1kx5
      1kz8
      1l3j
      1l5g
      1lby
      1lec
      1led
      1lem
      1len
      1les
      1lev
      1lfa
      1lgb
      1lgc
      1lgr
      1ll2
      1lnc
      1loa
      1lob
      1loc
      1lod
      1loe
      1lof
      1log
      1lqk
      1lqo
      1lqp
      1lt1
      1lte
      1lu1
      1lu2
      1lul
      1luv
      1luw
      1lv5
      1lwd
      1lzi
      1lzj
      1m0d
      1m18
      1m19
      1m1a
      1m1x
      1m35
      1m4z
      1m51
      1m6p
      1m6v
      1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex At 2.3 Angstroms Resolution (pdb 1lof)






The binding sites of Manganese atom in the structure of X-Ray Structure of A Biantennary Octasaccharide-Lectin Complex At 2.3 Angstroms Resolution (pdb code 1lof). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1lof structure was solved by Y.BOURNE, C.CAMBILLAU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-2.3
Space groupC121
a (A)78.300
b (A)75.400
c (A)103.900
alpha (°)90.00
beta (°)92.00
gamma (°)90.00
Rfactor (%)19
Rfree (%)n/a


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 1lof


Manganese binding site 1 out of 2 in 1lof
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 1lof
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1lof. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu119, A: Asp121, A: Trp128, A: Asp129, A: Pro130, A: His136, A: Ile144, A: Ser146, A: Hoh745, A: Hoh746, A: Hoh747,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu1193.43
MnOE2 A:Glu1192.45
MnCD A:Glu1193.30
MnCG A:Glu1194.66
MnCB A:Asp1213.83
MnOD2 A:Asp1212.01
MnOD1 A:Asp1214.08
MnCG A:Asp1213.14
MnCD1 A:Trp1284.53
MnNE1 A:Trp1284.72
MnCB A:Asp1294.51
MnOD2 A:Asp1294.03
MnOD1 A:Asp1292.30
MnCG A:Asp1293.45
MnCA A:Asp1294.79
MnCD A:Pro1304.99
MnNE2 A:His1362.86
MnND1 A:His1364.88
MnCD2 A:His1363.60
MnCE1 A:His1363.88
MnCG A:His1364.79
MnO A:Ile1444.30
MnOG A:Ser1463.89
MnO A:Hoh7454.03
MnO A:Hoh7461.54
MnO A:Hoh7471.50

interactive model:


Manganese binding site 2 out of 2 in 1lof


Manganese binding site 2 out of 2 in 1lof
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 1lof
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1lof. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu119, C: Asp121, C: Trp128, C: Asp129, C: Pro130, C: His136, C: Ile144, C: Ser146, C: Hoh641, C: Hoh682, C: Hoh683, C: Hoh684,

conact list:


AtomAtomDistance (A)
MnOE1 C:Glu1192.97
MnOE2 C:Glu1193.56
MnCD C:Glu1193.60
MnCG C:Glu1194.93
MnCB C:Asp1214.04
MnOD2 C:Asp1212.40
MnOD1 C:Asp1214.58
MnCG C:Asp1213.54
MnCD1 C:Trp1284.46
MnNE1 C:Trp1284.66
MnCB C:Asp1294.57
MnOD2 C:Asp1294.20
MnOD1 C:Asp1292.35
MnCG C:Asp1293.54
MnCA C:Asp1294.72
MnCD C:Pro1304.71
MnNE2 C:His1362.85
MnND1 C:His1364.87
MnCD2 C:His1363.53
MnCE1 C:His1363.90
MnCG C:His1364.76
MnO C:Ile1444.07
MnOG C:Ser1463.74
MnO C:Hoh6411.60
MnO C:Hoh6824.11
MnO C:Hoh6831.53
MnO C:Hoh6841.50

interactive model:




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