Manganese in PDB 1lob: Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site

The structure of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site, PDB code: 1lob was solved by Y.Bourne, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.300, 139.800, 62.700, 90.00, 91.00, 90.00
R / Rfree (%)	18.2 / n/a

The structure of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site (pdb code 1lob). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site, PDB code: 1lob:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn229 b:17.8 occ:1.00 O A:HOH270 1.6 21.9 1.0 O A:HOH276 1.6 15.8 1.0 NE2 A:HIS136 2.0 4.4 1.0 OD1 A:ASP129 2.2 10.1 1.0 OD2 A:ASP121 2.2 8.4 1.0 OE2 A:GLU119 2.3 6.5 1.0 CD2 A:HIS136 3.0 4.8 1.0 CE1 A:HIS136 3.1 9.0 1.0 CD A:GLU119 3.2 8.8 1.0 CG A:ASP129 3.2 12.4 1.0 CG A:ASP121 3.2 9.1 1.0 OE1 A:GLU119 3.4 9.2 1.0 CB A:ASP121 3.6 9.8 1.0 OD2 A:ASP129 3.8 10.1 1.0 O A:HOH269 3.9 29.4 1.0 CG A:HIS136 4.1 8.2 1.0 ND1 A:HIS136 4.2 7.6 1.0 OG A:SER146 4.2 9.7 1.0 OD1 A:ASP121 4.3 6.7 1.0 CA A:CA228 4.3 13.2 1.0 CB A:ASP129 4.4 12.7 1.0 CG A:GLU119 4.6 7.5 1.0 CD A:PRO130 4.6 16.9 1.0 CA A:ASP129 4.7 12.9 1.0 O A:ILE144 4.7 9.8 1.0 CD1 A:TRP128 4.7 7.4 1.0 NE1 A:TRP128 4.8 9.2 1.0

Manganese binding site 2 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn459 b:30.4 occ:1.00 O C:HOH492 1.5 58.5 1.0 O C:HOH491 1.5 30.0 1.0 OD2 C:ASP121 2.1 27.0 1.0 OD1 C:ASP129 2.4 25.8 1.0 NE2 C:HIS136 2.4 17.6 1.0 OE2 C:GLU119 2.5 24.4 1.0 CD C:GLU119 3.2 21.6 1.0 OE1 C:GLU119 3.2 22.2 1.0 CG C:ASP121 3.2 25.9 1.0 CD2 C:HIS136 3.4 19.7 1.0 CE1 C:HIS136 3.4 17.4 1.0 CG C:ASP129 3.4 28.0 1.0 CB C:ASP121 3.7 24.4 1.0 OD2 C:ASP129 3.9 31.3 1.0 OG C:SER146 4.0 20.7 1.0 O C:HOH490 4.0 48.1 1.0 OD1 C:ASP121 4.2 28.3 1.0 O C:ILE144 4.2 24.1 1.0 O C:HOH469 4.3 16.8 1.0 CD1 C:TRP128 4.5 25.4 1.0 ND1 C:HIS136 4.5 19.0 1.0 CB C:ASP129 4.5 29.1 1.0 CG C:HIS136 4.5 18.7 1.0 CG C:GLU119 4.6 19.2 1.0 NE1 C:TRP128 4.7 24.2 1.0 CA C:ASP129 4.8 30.8 1.0 CA C:CA458 4.9 46.8 1.0 CD C:PRO130 4.9 32.7 1.0

Manganese binding site 3 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn689 b:27.5 occ:1.00 O E:HOH700 1.5 32.0 1.0 O E:HOH714 1.5 34.7 1.0 OD2 E:ASP121 2.0 15.6 1.0 OD1 E:ASP129 2.3 19.6 1.0 OE2 E:GLU119 2.5 18.1 1.0 NE2 E:HIS136 2.6 13.9 1.0 CG E:ASP121 3.2 14.3 1.0 CG E:ASP129 3.3 21.4 1.0 CD E:GLU119 3.3 18.5 1.0 CD2 E:HIS136 3.4 15.4 1.0 OE1 E:GLU119 3.4 18.5 1.0 CE1 E:HIS136 3.7 14.6 1.0 OD2 E:ASP129 3.7 20.0 1.0 CB E:ASP121 3.8 13.8 1.0 O E:HOH713 3.9 37.1 1.0 OG E:SER146 4.0 19.0 1.0 OD1 E:ASP121 4.2 17.2 1.0 O E:ILE144 4.3 21.8 1.0 CB E:ASP129 4.4 21.4 1.0 CD1 E:TRP128 4.5 19.1 1.0 CG E:HIS136 4.6 15.7 1.0 NE1 E:TRP128 4.6 16.7 1.0 ND1 E:HIS136 4.7 16.1 1.0 CD E:PRO130 4.7 26.6 1.0 CA E:ASP129 4.7 23.7 1.0 CG E:GLU119 4.7 14.6 1.0 CA E:CA688 4.8 36.9 1.0

Manganese binding site 4 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ G:Mn919 b:19.8 occ:1.00 O G:HOH949 1.5 21.4 1.0 O G:HOH948 1.6 23.4 1.0 OD2 G:ASP121 2.2 14.6 1.0 OE2 G:GLU119 2.3 11.9 1.0 OD1 G:ASP129 2.3 20.7 1.0 NE2 G:HIS136 2.5 15.4 1.0 CD G:GLU119 3.2 16.3 1.0 CG G:ASP121 3.3 13.8 1.0 CD2 G:HIS136 3.3 14.7 1.0 OE1 G:GLU119 3.3 14.7 1.0 CG G:ASP129 3.4 21.5 1.0 CE1 G:HIS136 3.6 14.2 1.0 CB G:ASP121 3.7 12.9 1.0 O G:HOH947 3.8 34.0 1.0 OD2 G:ASP129 3.9 19.5 1.0 OG G:SER146 4.0 12.8 1.0 O G:HOH928 4.2 21.5 1.0 OD1 G:ASP121 4.3 17.1 1.0 O G:ILE144 4.5 15.0 1.0 CB G:ASP129 4.5 22.7 1.0 CA G:CA918 4.5 11.4 1.0 NE1 G:TRP128 4.5 16.0 1.0 CG G:HIS136 4.5 14.4 1.0 CD1 G:TRP128 4.5 18.0 1.0 ND1 G:HIS136 4.6 16.2 1.0 CG G:GLU119 4.6 16.3 1.0 CA G:ASP129 4.8 25.1 1.0 CD G:PRO130 4.8 30.1 1.0

Y.Bourne, A.Roussel, M.Frey, P.Rouge, J.C.Fontecilla-Camps, C.Cambillau. Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide-Binding Site. Proteins V. 8 365 1990.
ISSN: ISSN 0887-3585
PubMed: 2091026
DOI: 10.1002/PROT.340080410