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Manganese in PDB 1lgr: Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium

Enzymatic activity of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium

All present enzymatic activity of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium:
6.3.1.2;

Protein crystallography data

The structure of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium, PDB code: 1lgr was solved by S.-H.Liaw, D.Eisenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 235.500, 134.500, 200.100, 90.00, 102.80, 90.00
R / Rfree (%) 23.3 / n/a

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Manganese atom in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium (pdb code 1lgr). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 24 binding sites of Manganese where determined in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium, PDB code: 1lgr:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 24 in 1lgr

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Manganese binding site 1 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn469

b:25.7
occ:1.00
 OE2 A:GLU131 2.1 28.4 1.0
OE1 A:GLU220 2.2 39.5 1.0
OE2 A:GLU212 2.3 33.8 1.0
CD A:GLU220 3.0 39.5 1.0
CD A:GLU131 3.2 28.4 1.0
CD A:GLU212 3.2 33.8 1.0
OE2 A:GLU220 3.3 39.5 1.0
CG A:GLU131 3.8 28.4 1.0
CG A:GLU212 3.8 33.8 1.0
OE1 A:GLU212 4.0 33.8 1.0
OE1 A:GLU131 4.1 28.4 1.0
CG A:GLU220 4.4 39.5 1.0
CE1 A:HIS210 4.7 14.5 1.0
CB A:GLU220 4.8 39.5 1.0

Manganese binding site 2 out of 24 in 1lgr

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Manganese binding site 2 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn470

b:25.7
occ:1.00
 OE1 A:GLU129 2.3 36.8 1.0
OE2 A:GLU357 2.3 27.9 1.0
OE2 A:GLU129 2.9 36.8 1.0
CD A:GLU357 3.0 27.9 1.0
CD A:GLU129 3.0 36.8 1.0
OE1 A:GLU357 3.0 27.9 1.0
ND1 A:HIS269 3.2 40.2 1.0
NH2 A:ARG359 3.7 55.7 1.0
NE A:ARG344 3.8 69.8 1.0
CE1 A:HIS269 3.8 40.2 1.0
CG A:HIS269 3.9 40.2 1.0
CZ A:ARG359 4.3 55.7 1.0
NE A:ARG359 4.3 55.7 1.0
CB A:HIS269 4.4 40.2 1.0
NH2 A:ARG344 4.4 69.8 1.0
CG A:GLU357 4.4 27.9 1.0
CZ A:ARG344 4.4 69.8 1.0
NE2 A:HIS271 4.4 35.7 1.0
CD A:ARG344 4.5 69.8 1.0
CG A:GLU129 4.6 36.8 1.0
NE2 A:HIS269 4.7 40.2 1.0
CD2 A:HIS269 4.8 40.2 1.0

Manganese binding site 3 out of 24 in 1lgr

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Manganese binding site 3 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn483

b:25.7
occ:1.00
 OE2 B:GLU131 2.1 28.4 1.0
OE1 B:GLU220 2.2 39.5 1.0
OE2 B:GLU212 2.3 33.8 1.0
CD B:GLU220 3.0 39.5 1.0
CD B:GLU131 3.2 28.4 1.0
CD B:GLU212 3.2 33.8 1.0
OE2 B:GLU220 3.3 39.5 1.0
CG B:GLU131 3.8 28.4 1.0
CG B:GLU212 3.8 33.8 1.0
OE1 B:GLU212 4.0 33.8 1.0
OE1 B:GLU131 4.1 28.4 1.0
CG B:GLU220 4.4 39.5 1.0
CE1 B:HIS210 4.7 14.5 1.0
CB B:GLU220 4.8 39.5 1.0

Manganese binding site 4 out of 24 in 1lgr

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Manganese binding site 4 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn484

b:25.7
occ:1.00
 OE2 B:GLU357 2.3 27.9 1.0
OE1 B:GLU129 2.3 36.8 1.0
OE2 B:GLU129 2.9 36.8 1.0
CD B:GLU357 3.0 27.9 1.0
CD B:GLU129 3.0 36.8 1.0
OE1 B:GLU357 3.0 27.9 1.0
ND1 B:HIS269 3.2 40.2 1.0
NH2 B:ARG359 3.7 55.7 1.0
NE B:ARG344 3.8 69.8 1.0
CE1 B:HIS269 3.8 40.2 1.0
CG B:HIS269 3.9 40.2 1.0
CZ B:ARG359 4.3 55.7 1.0
NE B:ARG359 4.3 55.7 1.0
CB B:HIS269 4.4 40.2 1.0
NH2 B:ARG344 4.4 69.8 1.0
CG B:GLU357 4.4 27.9 1.0
CZ B:ARG344 4.4 69.8 1.0
NE2 B:HIS271 4.4 35.7 1.0
CD B:ARG344 4.5 69.8 1.0
CG B:GLU129 4.6 36.8 1.0
NE2 B:HIS269 4.8 40.2 1.0
CD2 B:HIS269 4.8 40.2 1.0

Manganese binding site 5 out of 24 in 1lgr

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Manganese binding site 5 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn485

b:25.7
occ:1.00
 OE2 C:GLU131 2.1 28.4 1.0
OE1 C:GLU220 2.2 39.5 1.0
OE2 C:GLU212 2.3 33.8 1.0
CD C:GLU220 3.0 39.5 1.0
CD C:GLU131 3.2 28.4 1.0
CD C:GLU212 3.2 33.8 1.0
OE2 C:GLU220 3.3 39.5 1.0
CG C:GLU131 3.8 28.4 1.0
CG C:GLU212 3.8 33.8 1.0
OE1 C:GLU212 4.0 33.8 1.0
OE1 C:GLU131 4.1 28.4 1.0
CG C:GLU220 4.4 39.5 1.0
CE1 C:HIS210 4.7 14.5 1.0
CB C:GLU220 4.8 39.5 1.0

Manganese binding site 6 out of 24 in 1lgr

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Manganese binding site 6 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn486

b:25.7
occ:1.00
 OE2 C:GLU357 2.3 27.9 1.0
OE1 C:GLU129 2.3 36.8 1.0
OE2 C:GLU129 2.9 36.8 1.0
CD C:GLU357 3.0 27.9 1.0
CD C:GLU129 3.0 36.8 1.0
OE1 C:GLU357 3.0 27.9 1.0
ND1 C:HIS269 3.2 40.2 1.0
NH2 C:ARG359 3.7 55.7 1.0
NE C:ARG344 3.8 69.8 1.0
CE1 C:HIS269 3.8 40.2 1.0
CG C:HIS269 3.9 40.2 1.0
CZ C:ARG359 4.3 55.7 1.0
NE C:ARG359 4.3 55.7 1.0
CB C:HIS269 4.4 40.2 1.0
NH2 C:ARG344 4.4 69.8 1.0
CG C:GLU357 4.4 27.9 1.0
CZ C:ARG344 4.4 69.8 1.0
NE2 C:HIS271 4.4 35.7 1.0
CD C:ARG344 4.5 69.8 1.0
CG C:GLU129 4.6 36.8 1.0
NE2 C:HIS269 4.8 40.2 1.0
CD2 C:HIS269 4.8 40.2 1.0

Manganese binding site 7 out of 24 in 1lgr

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Manganese binding site 7 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn487

b:25.7
occ:1.00
 OE2 D:GLU131 2.1 28.4 1.0
OE1 D:GLU220 2.2 39.5 1.0
OE2 D:GLU212 2.3 33.8 1.0
CD D:GLU220 3.0 39.5 1.0
CD D:GLU131 3.2 28.4 1.0
CD D:GLU212 3.2 33.8 1.0
OE2 D:GLU220 3.3 39.5 1.0
CG D:GLU131 3.8 28.4 1.0
CG D:GLU212 3.8 33.8 1.0
OE1 D:GLU212 4.0 33.8 1.0
OE1 D:GLU131 4.1 28.4 1.0
CG D:GLU220 4.4 39.5 1.0
CE1 D:HIS210 4.7 14.5 1.0
CB D:GLU220 4.8 39.5 1.0

Manganese binding site 8 out of 24 in 1lgr

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Manganese binding site 8 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn488

b:25.7
occ:1.00
 OE1 D:GLU129 2.3 36.8 1.0
OE2 D:GLU357 2.3 27.9 1.0
OE2 D:GLU129 2.9 36.8 1.0
CD D:GLU357 3.0 27.9 1.0
CD D:GLU129 3.0 36.8 1.0
OE1 D:GLU357 3.0 27.9 1.0
ND1 D:HIS269 3.2 40.2 1.0
NH2 D:ARG359 3.7 55.7 1.0
NE D:ARG344 3.8 69.8 1.0
CE1 D:HIS269 3.8 40.2 1.0
CG D:HIS269 3.9 40.2 1.0
CZ D:ARG359 4.3 55.7 1.0
NE D:ARG359 4.3 55.7 1.0
CB D:HIS269 4.3 40.2 1.0
NH2 D:ARG344 4.4 69.8 1.0
CG D:GLU357 4.4 27.9 1.0
CZ D:ARG344 4.4 69.8 1.0
NE2 D:HIS271 4.4 35.7 1.0
CD D:ARG344 4.5 69.8 1.0
CG D:GLU129 4.6 36.8 1.0
NE2 D:HIS269 4.7 40.2 1.0
CD2 D:HIS269 4.8 40.2 1.0

Manganese binding site 9 out of 24 in 1lgr

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Manganese binding site 9 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn489

b:25.7
occ:1.00
 OE2 E:GLU131 2.1 28.4 1.0
OE1 E:GLU220 2.2 39.5 1.0
OE2 E:GLU212 2.3 33.8 1.0
CD E:GLU220 3.0 39.5 1.0
CD E:GLU131 3.2 28.4 1.0
CD E:GLU212 3.2 33.8 1.0
OE2 E:GLU220 3.3 39.5 1.0
CG E:GLU131 3.8 28.4 1.0
CG E:GLU212 3.8 33.8 1.0
OE1 E:GLU212 4.0 33.8 1.0
OE1 E:GLU131 4.1 28.4 1.0
CG E:GLU220 4.4 39.5 1.0
CE1 E:HIS210 4.7 14.5 1.0
CB E:GLU220 4.8 39.5 1.0

Manganese binding site 10 out of 24 in 1lgr

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Manganese binding site 10 out of 24 in the Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn490

b:25.7
occ:1.00
 OE1 E:GLU129 2.3 36.8 1.0
OE2 E:GLU357 2.3 27.9 1.0
OE2 E:GLU129 2.9 36.8 1.0
CD E:GLU357 3.0 27.9 1.0
CD E:GLU129 3.0 36.8 1.0
OE1 E:GLU357 3.0 27.9 1.0
ND1 E:HIS269 3.2 40.2 1.0
NH2 E:ARG359 3.7 55.7 1.0
NE E:ARG344 3.8 69.8 1.0
CE1 E:HIS269 3.8 40.2 1.0
CG E:HIS269 3.9 40.2 1.0
CZ E:ARG359 4.3 55.7 1.0
NE E:ARG359 4.3 55.7 1.0
CB E:HIS269 4.3 40.2 1.0
NH2 E:ARG344 4.4 69.8 1.0
CG E:GLU357 4.4 27.9 1.0
CZ E:ARG344 4.4 69.8 1.0
NE2 E:HIS271 4.4 35.7 1.0
CD E:ARG344 4.5 69.8 1.0
CG E:GLU129 4.6 36.8 1.0
NE2 E:HIS269 4.7 40.2 1.0
CD2 E:HIS269 4.8 40.2 1.0

Reference:

S.H.Liaw, G.Jun, D.Eisenberg. Interactions of Nucleotides with Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium. Biochemistry V. 33 11184 1994.
ISSN: ISSN 0006-2960
PubMed: 7727369
DOI: 10.1021/BI00203A014
Page generated: Sat Oct 5 11:29:29 2024

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