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Manganese in PDB 1lec: Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution

Protein crystallography data

The structure of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution, PDB code: 1lec was solved by L.Delbaere, M.Vandonselaar, J.Quail, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.900, 78.900, 89.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1lec:

The structure of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution (pdb code 1lec). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution, PDB code: 1lec:

Manganese binding site 1 out of 1 in 1lec

Go back to Manganese Binding Sites List in 1lec
Manganese binding site 1 out of 1 in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn250

b:20.7
occ:1.00
O A:HOH305 2.0 16.0 0.9
OD2 A:ASP131 2.1 17.6 1.0
O A:HOH332 2.2 20.5 1.0
OE2 A:GLU129 2.2 18.4 1.0
NE2 A:HIS145 2.3 24.4 1.0
OD1 A:ASP140 2.3 23.7 1.0
CG A:ASP140 3.1 20.5 1.0
CG A:ASP131 3.1 19.9 1.0
CD2 A:HIS145 3.1 22.3 1.0
CE1 A:HIS145 3.2 19.2 1.0
CD A:GLU129 3.3 18.6 1.0
OD2 A:ASP140 3.5 23.0 1.0
OE1 A:GLU129 3.6 21.0 1.0
CB A:ASP131 3.7 17.0 1.0
O A:HOH333 4.0 17.2 0.8
OD1 A:ASP131 4.1 20.3 1.0
CA A:CA251 4.2 21.6 1.0
OG A:SER155 4.2 19.7 1.0
CB A:ASP140 4.2 20.1 1.0
ND1 A:HIS145 4.3 23.0 1.0
CG A:HIS145 4.3 22.4 1.0
O A:HOH325 4.5 15.7 0.9
CG A:GLU129 4.6 16.9 1.0
CA A:ASP140 4.6 27.4 1.0
O A:ILE153 4.6 23.0 1.0

Reference:

L.T.Delbaere, M.Vandonselaar, L.Prasad, J.W.Quail, K.S.Wilson, Z.Dauter. Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 A Resolution. J.Mol.Biol. V. 230 950 1993.
ISSN: ISSN 0022-2836
PubMed: 8478943
DOI: 10.1006/JMBI.1993.1212
Page generated: Sat Oct 5 11:26:09 2024

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