Manganese in PDB 1k4o: Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol

The structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol, PDB code: 1k4o was solved by D.-I.Liao, Y.-J.Zheng, P.V.Viitanen, D.B.Jordan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	53.613, 88.069, 43.851, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Manganese atom in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol (pdb code 1k4o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol, PDB code: 1k4o:

Manganese binding site 1 out of 1 in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with One Manganese, and A Glycerol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1003 b:14.3 occ:1.00 OE2 A:GLU37 2.1 16.4 1.0 O3 A:GOL1004 2.2 14.5 1.0 O A:HOH1016 2.2 14.2 1.0 O2 A:SO41001 2.2 14.4 1.0 ND1 A:HIS153 2.2 13.9 1.0 O2 A:GOL1004 2.4 18.6 1.0 CE1 A:HIS153 3.1 13.6 1.0 CD A:GLU37 3.1 16.1 1.0 C2 A:GOL1004 3.2 19.3 1.0 C3 A:GOL1004 3.2 26.5 1.0 CG A:HIS153 3.3 11.8 1.0 S A:SO41001 3.4 14.6 1.0 OE1 A:GLU37 3.4 18.3 1.0 O3 A:SO41001 3.6 19.2 1.0 O A:HOH1048 3.7 17.5 1.0 CB A:HIS153 3.7 11.2 1.0 OD1 A:ASP41 4.0 14.1 1.0 OD2 A:ASP41 4.1 12.4 1.0 O4 A:SO41001 4.2 16.6 1.0 NE2 A:HIS153 4.3 12.7 1.0 NH1 A:ARG36 4.3 17.2 1.0 N A:HIS153 4.4 11.6 1.0 O A:HOH1033 4.4 15.8 1.0 OE1 A:GLU39 4.4 15.0 1.0 CG A:ASP41 4.4 12.2 1.0 CD2 A:HIS153 4.4 12.3 1.0 CG A:GLU37 4.4 14.2 1.0 O1 A:SO41001 4.5 14.2 1.0 C1 A:GOL1004 4.6 22.2 1.0 CA A:HIS153 4.7 12.3 1.0 CB A:GLU37 4.9 14.9 1.0

D.I.Liao, Y.J.Zheng, P.V.Viitanen, D.B.Jordan. Structural Definition of the Active Site and Catalytic Mechanism of 3,4-Dihydroxy-2-Butanone-4-Phosphate Synthase. Biochemistry V. 41 1795 2002.
ISSN: ISSN 0006-2960
PubMed: 11827524
DOI: 10.1021/BI015652U