Manganese in the structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex With One Manganese, and A Glycerol (pdb 1k4o)

The binding sites of Manganese atom in the structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex With One Manganese, and A Glycerol (pdb code 1k4o). This binding sites where shown with 5.0 Angstroms radius around Manganese atom. The 1k4o structure was solved by D.-I.LIAO, Y.-J.ZHENG, P.V.VIITANEN, D.B.JORDAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 15.0-1.1 Space group P21212 a (A) 53.613 b (A) 88.069 c (A) 43.851 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) n/a Manganese Binding Sites: Manganese binding site 1 out of 1 in 1k4o Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1k4o. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Arg36, A: Glu37, A: Glu39, A: Asp41, A: His153, A: So41001, A: Gol1004, A: Hoh1016, A: Hoh1033, A: Hoh1048, conact list: Atom Atom Distance (A) Mn NH1 A:Arg36 4.32 Mn OE1 A:Glu37 3.45 Mn CB A:Glu37 4.92 Mn OE2 A:Glu37 2.06 Mn CD A:Glu37 3.13 Mn CG A:Glu37 4.45 Mn OE1 A:Glu39 4.40 Mn OD2 A:Asp41 4.08 Mn OD1 A:Asp41 4.04 Mn CG A:Asp41 4.40 Mn NE2 A:His153 4.29 Mn N A:His153 4.37 Mn CB A:His153 3.73 Mn ND1 A:His153 2.25 Mn CD2 A:His153 4.40 Mn CE1 A:His153 3.09 Mn CG A:His153 3.34 Mn CA A:His153 4.68 Mn S A:So41001 3.42 Mn O1 A:So41001 4.51 Mn O2 A:So41001 2.23 Mn O4 A:So41001 4.20 Mn O3 A:So41001 3.61 Mn O2 A:Gol1004 2.39 Mn C1 A:Gol1004 4.65 Mn C3 A:Gol1004 3.19 Mn O3 A:Gol1004 2.18 Mn C2 A:Gol1004 3.18 Mn O A:Hoh1016 2.19 Mn O A:Hoh1033 4.37 Mn O A:Hoh1048 3.67 interactive model: