Manganese in PDB 1j25: Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal

The structure of Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal, PDB code: 1j25 was solved by T.Nishino, K.Komori, Y.Ishino, K.Morikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.78
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.795, 69.795, 58.509, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 25.2

The binding sites of Manganese atom in the Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal (pdb code 1j25). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal, PDB code: 1j25:

Manganese binding site 1 out of 1 in the Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Archaeal Xpf/MUS81 Homolog, Hef From Pyrococcus Furiosus, Nuclease Domain, Mn Cocrystal within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1001 b:32.6 occ:1.00 O A:ARG49 2.0 15.1 1.0 OD2 A:ASP38 2.2 16.2 1.0 O A:HOH1054 2.4 28.7 1.0 O A:HOH1034 2.4 39.7 1.0 O A:HOH1025 2.6 26.2 1.0 CG A:ASP38 3.1 17.5 1.0 C A:ARG49 3.2 15.7 1.0 OD1 A:ASP38 3.4 19.0 1.0 OE1 A:GLU48 3.5 29.7 1.0 O A:HOH1042 3.6 37.7 1.0 N A:ARG49 3.7 15.2 1.0 CA A:ARG49 3.9 14.8 1.0 CD A:GLU48 3.9 27.3 1.0 CB A:ARG49 4.1 14.9 1.0 N A:LYS50 4.3 16.3 1.0 CG A:GLU48 4.4 23.3 1.0 O A:HOH1007 4.4 19.2 1.0 O A:HOH1041 4.4 28.5 1.0 CB A:ASP38 4.5 15.8 1.0 OE2 A:GLU48 4.5 30.9 1.0 CA A:LYS50 4.6 18.6 1.0 C A:GLU48 4.6 15.5 1.0 O A:HOH1053 4.8 29.6 1.0 OE2 A:GLU13 4.9 22.0 1.0 CG A:ARG49 4.9 14.2 1.0

T.Nishino, K.Komori, Y.Ishino, K.Morikawa. X-Ray and Biochemical Anatomy of An Archaeal Xpf/RAD1/MUS81 Family Nuclease. Similarity Between Its Endonuclease Domain and Restriction Enzymes Structure V. 11 445 2003.
ISSN: ISSN 0969-2126
PubMed: 12679022
DOI: 10.1016/S0969-2126(03)00046-7