Atomistry » Manganese » PDB 1ho5-1j53 » 1izl
Atomistry »
  Manganese »
    PDB 1ho5-1j53 »
      1izl »

Manganese in PDB 1izl: Crystal Structure of Photosystem II

Protein crystallography data

The structure of Crystal Structure of Photosystem II, PDB code: 1izl was solved by N.Kamiya, J.-R.Shen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 3.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 129.377, 225.192, 308.672, 90.00, 90.00, 90.00
R / Rfree (%) 53 / n/a

Other elements in 1izl:

The structure of Crystal Structure of Photosystem II also contains other interesting chemical elements:

Magnesium (Mg) 72 atoms
Iron (Fe) 6 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Photosystem II (pdb code 1izl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Crystal Structure of Photosystem II, PDB code: 1izl:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 1 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn361

b:46.9
occ:1.00
C A:ALA344 1.8 46.9 1.0
O A:ALA344 2.3 46.9 1.0
MN A:MN362 2.7 46.9 1.0
CA A:ALA344 3.2 46.9 1.0
MN A:MN364 3.3 46.9 1.0
CB A:ALA344 3.6 46.9 1.0
N A:ALA344 4.0 46.9 1.0
C A:LEU343 4.6 46.9 1.0
OE1 A:GLU189 4.7 46.9 1.0
O A:LEU343 4.8 46.9 1.0

Manganese binding site 2 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 2 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn362

b:46.9
occ:1.00
MN A:MN361 2.7 46.9 1.0
MN A:MN363 2.7 46.9 1.0
MN A:MN364 2.7 46.9 1.0
OE1 A:GLU333 3.5 46.9 1.0
OE2 A:GLU333 3.9 46.9 1.0
CD A:GLU333 4.1 46.9 1.0
C A:ALA344 4.2 46.9 1.0
O A:ALA344 4.8 46.9 1.0
OD1 A:ASP170 4.8 46.9 1.0
CB A:ALA344 4.9 46.9 1.0

Manganese binding site 3 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 3 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn363

b:46.9
occ:1.00
OD1 A:ASP170 2.2 46.9 1.0
MN A:MN362 2.7 46.9 1.0
CG A:ASP170 3.2 46.9 1.0
OD2 A:ASP170 3.8 46.9 1.0
OE1 A:GLU333 4.0 46.9 1.0
CB A:ASP170 4.3 46.9 1.0
OE2 A:GLU333 4.6 46.9 1.0
CD A:GLU333 4.6 46.9 1.0
MN A:MN364 5.0 46.9 1.0

Manganese binding site 4 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 4 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn364

b:46.9
occ:1.00
MN A:MN362 2.7 46.9 1.0
CB A:ALA344 3.1 46.9 1.0
MN A:MN361 3.3 46.9 1.0
OE1 A:GLU333 3.6 46.9 1.0
C A:ALA344 3.9 46.9 1.0
CD A:GLU189 3.9 46.9 1.0
OE1 A:GLU189 4.1 46.9 1.0
CA A:ALA344 4.1 46.9 1.0
OE2 A:GLU189 4.1 46.9 1.0
CG A:GLU189 4.3 46.9 1.0
CD A:GLU333 4.3 46.9 1.0
OE2 A:GLU333 4.6 46.9 1.0
N A:ALA344 4.9 46.9 1.0
MN A:MN363 5.0 46.9 1.0

Manganese binding site 5 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 5 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mn361

b:46.9
occ:1.00
C J:ALA344 1.9 46.9 1.0
O J:ALA344 2.5 46.9 1.0
MN J:MN362 2.7 46.9 1.0
CA J:ALA344 3.2 46.9 1.0
MN J:MN364 3.3 46.9 1.0
CB J:ALA344 3.5 46.9 1.0
N J:ALA344 3.9 46.9 1.0
OE1 J:GLU189 4.5 46.9 1.0
C J:LEU343 4.7 46.9 1.0
O J:LEU343 4.9 46.9 1.0

Manganese binding site 6 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 6 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mn362

b:46.9
occ:1.00
MN J:MN361 2.7 46.9 1.0
MN J:MN363 2.7 46.9 1.0
MN J:MN364 2.8 46.9 1.0
OE1 J:GLU333 3.5 46.9 1.0
OE2 J:GLU333 4.0 46.9 1.0
CD J:GLU333 4.1 46.9 1.0
C J:ALA344 4.3 46.9 1.0
OD1 J:ASP170 4.8 46.9 1.0
CB J:ALA344 4.9 46.9 1.0
O J:ALA344 4.9 46.9 1.0

Manganese binding site 7 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 7 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mn363

b:46.9
occ:1.00
OD1 J:ASP170 2.2 46.9 1.0
MN J:MN362 2.7 46.9 1.0
CG J:ASP170 3.3 46.9 1.0
OD2 J:ASP170 3.9 46.9 1.0
OE1 J:GLU333 4.0 46.9 1.0
CB J:ASP170 4.5 46.9 1.0
CD J:GLU333 4.8 46.9 1.0
OE2 J:GLU333 4.8 46.9 1.0
MN J:MN364 4.9 46.9 1.0

Manganese binding site 8 out of 8 in 1izl

Go back to Manganese Binding Sites List in 1izl
Manganese binding site 8 out of 8 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mn364

b:46.9
occ:1.00
MN J:MN362 2.8 46.9 1.0
MN J:MN361 3.3 46.9 1.0
CB J:ALA344 3.4 46.9 1.0
CD J:GLU189 3.5 46.9 1.0
OE1 J:GLU189 3.6 46.9 1.0
CG J:GLU189 3.8 46.9 1.0
OE2 J:GLU189 3.9 46.9 1.0
OE1 J:GLU333 3.9 46.9 1.0
C J:ALA344 4.2 46.9 1.0
CA J:ALA344 4.4 46.9 1.0
CD J:GLU333 4.8 46.9 1.0
MN J:MN363 4.9 46.9 1.0

Reference:

N.Kamiya, J.-R.Shen. Crystal Structure of Oxygen-Evolving Photosystem II From Thermosynechococcus Vulcanus at 3.7-A Resolution Proc.Natl.Acad.Sci.Usa V. 100 98 2003.
ISSN: ISSN 0027-8424
PubMed: 12518057
DOI: 10.1073/PNAS.0135651100
Page generated: Tue Dec 15 03:50:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy