Atomistry » Manganese » PDB 1ho5-1j53 » 1ir6
Atomistry »
  Manganese »
    PDB 1ho5-1j53 »
      1ir6 »

Manganese in PDB 1ir6: Crystal Structure of Exonuclease Recj Bound to Manganese

Protein crystallography data

The structure of Crystal Structure of Exonuclease Recj Bound to Manganese, PDB code: 1ir6 was solved by A.Yamagata, Y.Kakuta, R.Masui, K.Fukuyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.83 / 2.90
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 141.600, 141.600, 141.600, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 25.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Exonuclease Recj Bound to Manganese (pdb code 1ir6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Exonuclease Recj Bound to Manganese, PDB code: 1ir6:

Manganese binding site 1 out of 1 in 1ir6

Go back to Manganese Binding Sites List in 1ir6
Manganese binding site 1 out of 1 in the Crystal Structure of Exonuclease Recj Bound to Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Exonuclease Recj Bound to Manganese within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1434

b:61.6
occ:1.00
NE2 A:HIS160 2.2 72.1 1.0
OD2 A:ASP84 2.4 52.3 1.0
OD2 A:ASP221 2.5 74.8 1.0
OD1 A:ASP136 2.6 71.2 1.0
OD2 A:ASP136 2.6 69.8 1.0
CG A:ASP136 3.0 68.9 1.0
CE1 A:HIS160 3.2 70.6 1.0
CG A:ASP221 3.2 74.4 1.0
CD2 A:HIS160 3.2 71.5 1.0
NE2 A:HIS161 3.2 79.7 1.0
CG A:ASP84 3.4 53.4 1.0
OD1 A:ASP221 3.4 74.8 1.0
CB A:ASP84 3.7 52.3 1.0
CD2 A:HIS161 3.9 79.2 1.0
N A:GLY187 4.2 63.4 1.0
ND1 A:HIS160 4.3 70.5 1.0
CE1 A:HIS161 4.3 79.3 1.0
CG A:HIS160 4.3 70.8 1.0
CB A:ASP221 4.5 73.6 1.0
CB A:ASP136 4.5 66.7 1.0
OD1 A:ASP84 4.5 55.3 1.0
OD1 A:ASP82 4.5 62.0 1.0
CA A:GLY187 4.6 62.8 1.0
OD2 A:ASP82 4.7 67.5 1.0

Reference:

A.Yamagata, Y.Kakuta, R.Masui, K.Fukuyama. The Crystal Structure of Exonuclease Recj Bound to MN2+ Ion Suggests How Its Characteristic Motifs Are Involved in Exonuclease Activity. Proc.Natl.Acad.Sci.Usa V. 99 5908 2002.
ISSN: ISSN 0027-8424
PubMed: 11972066
DOI: 10.1073/PNAS.092547099
Page generated: Tue Dec 15 03:50:00 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy