Manganese in PDB 1i9a: Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase

All present enzymatic activity of Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase:
5.3.3.2;

The structure of Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase, PDB code: 1i9a was solved by J.B.Bonanno, C.Edo, N.Eswar, U.Pieper, M.J.Romanowski, V.Ilyin, S.E.Gerchman, H.Kycia, F.W.Studier, A.Sali, S.K.Burley, New Yorksgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	72.758, 72.758, 204.471, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 27.9

The binding sites of Manganese atom in the Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase (pdb code 1i9a). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase, PDB code: 1i9a:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1001 b:32.6 occ:1.00 NE2 A:HIS69 2.0 35.5 1.0 OE2 A:GLU116 2.1 39.3 1.0 OE1 A:GLU114 2.1 39.5 1.0 NE2 A:HIS32 2.2 37.3 1.0 NE2 A:HIS25 2.2 33.3 1.0 OE2 A:GLU114 2.3 38.9 1.0 CD A:GLU114 2.5 39.0 1.0 CD2 A:HIS69 2.9 36.8 1.0 CE1 A:HIS69 3.0 37.8 1.0 CD2 A:HIS32 3.1 38.1 1.0 CD A:GLU116 3.2 39.5 1.0 CE1 A:HIS32 3.2 38.1 1.0 CE1 A:HIS25 3.2 33.0 1.0 CD2 A:HIS25 3.2 33.2 1.0 CG A:GLU116 3.6 39.0 1.0 CG A:GLU114 4.1 38.5 1.0 ND1 A:HIS69 4.1 36.9 1.0 CG A:HIS69 4.1 37.6 1.0 OE1 A:GLU116 4.2 39.7 1.0 ND1 A:HIS32 4.3 38.5 1.0 CG A:HIS32 4.3 38.4 1.0 ND1 A:HIS25 4.3 33.2 1.0 CG A:HIS25 4.4 34.2 1.0 CG2 A:VAL6 4.7 41.1 1.0 CB A:GLU114 5.0 38.0 1.0 CB A:ALA34 5.0 39.0 1.0

Manganese binding site 2 out of 2 in the Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structural Studies of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase and Isopentenyl Diphosphate Isomerase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn2001 b:39.8 occ:1.00 NE2 B:HIS1069 2.0 41.5 1.0 OE1 B:GLU1114 2.1 49.4 1.0 NE2 B:HIS1025 2.2 49.1 1.0 OE2 B:GLU1116 2.2 39.4 1.0 NE2 B:HIS1032 2.3 47.0 1.0 OE2 B:GLU1114 2.5 49.3 1.0 CD B:GLU1114 2.6 48.6 1.0 CD2 B:HIS1069 2.9 41.9 1.0 CE1 B:HIS1069 3.1 41.9 1.0 CE1 B:HIS1025 3.1 49.4 1.0 CD B:GLU1116 3.2 39.2 1.0 CD2 B:HIS1025 3.2 49.6 1.0 CE1 B:HIS1032 3.2 46.9 1.0 CD2 B:HIS1032 3.3 47.3 1.0 CG B:GLU1116 3.6 38.9 1.0 CG B:GLU1114 4.1 48.4 1.0 CG B:HIS1069 4.1 42.8 1.0 ND1 B:HIS1069 4.1 42.4 1.0 ND1 B:HIS1025 4.3 48.8 1.0 OE1 B:GLU1116 4.3 37.9 1.0 CG B:HIS1025 4.3 49.4 1.0 ND1 B:HIS1032 4.4 47.2 1.0 CG B:HIS1032 4.4 46.7 1.0 CG2 B:VAL1006 4.6 45.7 1.0

J.B.Bonanno, C.Edo, N.Eswar, U.Pieper, M.J.Romanowski, V.Ilyin, S.E.Gerchman, H.Kycia, F.W.Studier, A.Sali, S.K.Burley. Structural Genomics of Enzymes Involved in Sterol/Isoprenoid Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 98 12896 2001.
ISSN: ISSN 0027-8424
PubMed: 11698677
DOI: 10.1073/PNAS.181466998