Manganese in PDB 1i3h: Concanavalin A-Dimannose Structure

The structure of Concanavalin A-Dimannose Structure, PDB code: 1i3h was solved by D.A.R.Sanders, D.N.Moothoo, J.Raftery, A.J.Howard, J.R.Helliwell, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.900, 86.410, 65.420, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 19

The structure of Concanavalin A-Dimannose Structure also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Manganese atom in the Concanavalin A-Dimannose Structure (pdb code 1i3h). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Concanavalin A-Dimannose Structure, PDB code: 1i3h:

Manganese binding site 1 out of 1 in the Concanavalin A-Dimannose Structure


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A-Dimannose Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn240 b:23.4 occ:1.00 OD2 A:ASP10 2.1 18.9 1.0 OE2 A:GLU8 2.2 19.2 1.0 O A:HOH246 2.2 26.9 1.0 OD1 A:ASP19 2.2 18.6 1.0 O A:HOH245 2.2 25.4 1.0 NE2 A:HIS24 2.2 18.5 1.0 CG A:ASP10 3.2 18.3 1.0 CG A:ASP19 3.2 18.0 1.0 CD A:GLU8 3.2 19.5 1.0 CE1 A:HIS24 3.2 17.9 1.0 CD2 A:HIS24 3.2 18.2 1.0 OE1 A:GLU8 3.6 20.0 1.0 CB A:ASP10 3.6 18.4 1.0 OD2 A:ASP19 3.6 18.9 1.0 O A:HOH243 4.0 25.2 1.0 O A:HOH294 4.1 35.0 1.0 OG A:SER34 4.2 19.8 1.0 CA A:CA241 4.2 25.0 1.0 OD1 A:ASP10 4.2 19.4 1.0 ND1 A:HIS24 4.3 18.6 1.0 CB A:ASP19 4.3 18.6 1.0 CG A:HIS24 4.4 18.1 1.0 CG A:GLU8 4.5 19.3 1.0 O A:VAL32 4.6 20.3 1.0 O A:HOH442 4.6 36.9 1.0 CA A:ASP19 4.7 18.7 1.0

D.A.Sanders, D.N.Moothoo, J.Raftery, A.J.Howard, J.R.Helliwell, J.H.Naismith. The 1.2 A Resolution Structure of the Con A-Dimannose Complex. J.Mol.Biol. V. 310 875 2001.
ISSN: ISSN 0022-2836
PubMed: 11453694
DOI: 10.1006/JMBI.2001.4806