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Manganese in PDB 1i3h: Concanavalin A-Dimannose Structure

Protein crystallography data

The structure of Concanavalin A-Dimannose Structure, PDB code: 1i3h was solved by D.A.R.Sanders, D.N.Moothoo, J.Raftery, A.J.Howard, J.R.Helliwell, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.900, 86.410, 65.420, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19

Other elements in 1i3h:

The structure of Concanavalin A-Dimannose Structure also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Concanavalin A-Dimannose Structure (pdb code 1i3h). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Concanavalin A-Dimannose Structure, PDB code: 1i3h:

Manganese binding site 1 out of 1 in 1i3h

Go back to Manganese Binding Sites List in 1i3h
Manganese binding site 1 out of 1 in the Concanavalin A-Dimannose Structure


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A-Dimannose Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn240

b:23.4
occ:1.00
OD2 A:ASP10 2.1 18.9 1.0
OE2 A:GLU8 2.2 19.2 1.0
O A:HOH246 2.2 26.9 1.0
OD1 A:ASP19 2.2 18.6 1.0
O A:HOH245 2.2 25.4 1.0
NE2 A:HIS24 2.2 18.5 1.0
CG A:ASP10 3.2 18.3 1.0
CG A:ASP19 3.2 18.0 1.0
CD A:GLU8 3.2 19.5 1.0
CE1 A:HIS24 3.2 17.9 1.0
CD2 A:HIS24 3.2 18.2 1.0
OE1 A:GLU8 3.6 20.0 1.0
CB A:ASP10 3.6 18.4 1.0
OD2 A:ASP19 3.6 18.9 1.0
O A:HOH243 4.0 25.2 1.0
O A:HOH294 4.1 35.0 1.0
OG A:SER34 4.2 19.8 1.0
CA A:CA241 4.2 25.0 1.0
OD1 A:ASP10 4.2 19.4 1.0
ND1 A:HIS24 4.3 18.6 1.0
CB A:ASP19 4.3 18.6 1.0
CG A:HIS24 4.4 18.1 1.0
CG A:GLU8 4.5 19.3 1.0
O A:VAL32 4.6 20.3 1.0
O A:HOH442 4.6 36.9 1.0
CA A:ASP19 4.7 18.7 1.0

Reference:

D.A.Sanders, D.N.Moothoo, J.Raftery, A.J.Howard, J.R.Helliwell, J.H.Naismith. The 1.2 A Resolution Structure of the Con A-Dimannose Complex. J.Mol.Biol. V. 310 875 2001.
ISSN: ISSN 0022-2836
PubMed: 11453694
DOI: 10.1006/JMBI.2001.4806
Page generated: Tue Dec 15 03:49:23 2020

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