Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
      1gzc
      1h48
      1h7q
      1h9p
      1h9w
      1hhs
      1hht
      1hi0
      1hk8
      1hkd
      1ho5
      1hpu
      1hq5
      1hqf
      1hqg
      1hqh
      1hql
      1hqw
      1hqx
      1hto
      1htq
      1hx3
      1i08
      1i0b
      1i0h
      1i19
      1i3h
      1i50
      1i5a
      1i5b
      1i74
      1i9a
      1id3
      1ig1
      1igv
      1ii7
      1ilx
      1imc
      1imd
      1ino
      1ips
      1ir6
      1it6
      1itw
      1ix9
      1ixb
      1izl
      1j25
      1j2t
      1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure Analysis Of the H30A Mutant of Manganese Superoxide Dismutase From E. Coli (pdb 1i08)






The binding sites of Manganese atom in the structure of Crystal Structure Analysis Of the H30A Mutant of Manganese Superoxide Dismutase From E. Coli (pdb code 1i08). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1i08 structure was solved by R.A.EDWARDS, M.M.WHITTAKER, J.W.WHITTAKER, E.N.BAKER, G.B.JAMESON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)40.0-2.2
Space groupC2221
a (A)100.681
b (A)109.110
c (A)181.072
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.4
Rfree (%)21.1


Manganese Binding Sites:

Manganese binding site 1 out of 4 in 1i08


Manganese binding site 1 out of 4 in 1i08
Click to enlarge
stereopicture of Manganese binding site 1 out of 4 in 1i08
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1i08. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His26, A: His81, A: Trp128, A: Gln146, A: Asp167, A: Trp169, A: His171, A: Ala172, A: Hoh278,

conact list:


AtomAtomDistance (A)
MnNE2 A:His262.17
MnND1 A:His264.20
MnCD2 A:His263.24
MnCE1 A:His263.04
MnCG A:His264.32
MnNE2 A:His812.23
MnND1 A:His814.28
MnCD2 A:His813.21
MnCE1 A:His813.16
MnCG A:His814.34
MnCZ2 A:Trp1284.57
MnNE2 A:Gln1464.77
MnCB A:Asp1674.31
MnOD2 A:Asp1671.95
MnOD1 A:Asp1673.58
MnCG A:Asp1673.08
MnCB A:Trp1694.62
MnCG A:Trp1694.82
MnNE2 A:His1712.15
MnND1 A:His1714.21
MnCD2 A:His1713.19
MnCE1 A:His1713.07
MnCG A:His1714.31
MnCB A:Ala1724.85
MnO A:Hoh2782.26

interactive model:


Manganese binding site 2 out of 4 in 1i08


Manganese binding site 2 out of 4 in 1i08
Click to enlarge
stereopicture of Manganese binding site 2 out of 4 in 1i08
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1i08. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His26, B: His81, B: Trp128, B: Gln146, B: Asp167, B: Trp169, B: His171, B: Ala172, B: Hoh7963,

conact list:


AtomAtomDistance (A)
MnNE2 B:His262.17
MnND1 B:His264.14
MnCD2 B:His263.22
MnCE1 B:His263.00
MnCG B:His264.28
MnNE2 B:His812.22
MnND1 B:His814.27
MnCD2 B:His813.22
MnCE1 B:His813.15
MnCG B:His814.34
MnCZ2 B:Trp1284.50
MnNE2 B:Gln1464.66
MnCB B:Asp1674.32
MnOD2 B:Asp1671.98
MnOD1 B:Asp1673.63
MnCG B:Asp1673.10
MnCB B:Trp1694.65
MnCG B:Trp1694.82
MnNE2 B:His1712.23
MnND1 B:His1714.29
MnCD2 B:His1713.26
MnCE1 B:His1713.14
MnCG B:His1714.38
MnCB B:Ala1724.91
MnO B:Hoh79632.24

interactive model:


Manganese binding site 3 out of 4 in 1i08


Manganese binding site 3 out of 4 in 1i08
Click to enlarge
stereopicture of Manganese binding site 3 out of 4 in 1i08
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1i08. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His26, C: His81, C: Trp128, C: Gln146, C: Asp167, C: Trp169, C: His171, C: Ala172, C: Hoh7964,

conact list:


AtomAtomDistance (A)
MnNE2 C:His262.24
MnND1 C:His264.28
MnCD2 C:His263.27
MnCE1 C:His263.14
MnCG C:His264.37
MnNE2 C:His812.19
MnND1 C:His814.22
MnCD2 C:His813.20
MnCE1 C:His813.10
MnCG C:His814.30
MnCZ2 C:Trp1284.46
MnCH2 C:Trp1284.90
MnNE2 C:Gln1464.72
MnCB C:Asp1674.28
MnOD2 C:Asp1671.93
MnOD1 C:Asp1673.54
MnCG C:Asp1673.04
MnCB C:Trp1694.64
MnCG C:Trp1694.83
MnNE2 C:His1712.24
MnND1 C:His1714.31
MnCD2 C:His1713.26
MnCE1 C:His1713.17
MnCG C:His1714.38
MnCB C:Ala1724.84
MnO C:Hoh79642.27

interactive model:


Manganese binding site 4 out of 4 in 1i08


Manganese binding site 4 out of 4 in 1i08
Click to enlarge
stereopicture of Manganese binding site 4 out of 4 in 1i08
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1i08. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: His26, D: His81, D: Trp128, D: Gln146, D: Asp167, D: Trp169, D: His171, D: Ala172, D: Hoh7965,

conact list:


AtomAtomDistance (A)
MnNE2 D:His262.14
MnND1 D:His264.17
MnCD2 D:His263.21
MnCE1 D:His263.02
MnCG D:His264.29
MnNE2 D:His812.13
MnND1 D:His814.20
MnCD2 D:His813.16
MnCE1 D:His813.06
MnCG D:His814.28
MnCZ2 D:Trp1284.48
MnCH2 D:Trp1284.99
MnNE2 D:Gln1464.68
MnCB D:Asp1674.33
MnOD2 D:Asp1671.97
MnOD1 D:Asp1673.54
MnCG D:Asp1673.07
MnCB D:Trp1694.64
MnCG D:Trp1694.82
MnNE2 D:His1712.22
MnND1 D:His1714.26
MnCD2 D:His1713.28
MnCE1 D:His1713.11
MnCG D:His1714.38
MnCB D:Ala1724.91
MnO D:Hoh79652.24

interactive model:




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