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Manganese in PDB 1gzc: High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose

Protein crystallography data

The structure of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose, PDB code: 1gzc was solved by C.Svensson, U.Krengel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.90 / 1.58
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.800, 81.800, 126.100, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 22.6

Other elements in 1gzc:

The structure of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose (pdb code 1gzc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose, PDB code: 1gzc:

Manganese binding site 1 out of 1 in 1gzc

Go back to Manganese Binding Sites List in 1gzc
Manganese binding site 1 out of 1 in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with Lactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn289

b:18.6
occ:1.00
OD2 A:ASP129 2.2 17.2 1.0
OE2 A:GLU127 2.2 18.2 1.0
OD1 A:ASP136 2.2 17.8 1.0
O A:HOH2260 2.2 18.2 1.0
O A:HOH2259 2.2 18.5 1.0
NE2 A:HIS142 2.3 17.3 1.0
CG A:ASP136 3.2 20.3 1.0
CG A:ASP129 3.2 16.5 1.0
CD A:GLU127 3.2 18.8 1.0
CE1 A:HIS142 3.2 17.6 1.0
CD2 A:HIS142 3.3 18.0 1.0
OE1 A:GLU127 3.6 18.8 1.0
CB A:ASP129 3.6 16.1 1.0
OD2 A:ASP136 3.7 18.6 1.0
O A:HOH2146 4.0 18.0 1.0
OG A:SER152 4.2 18.9 1.0
CA A:CA290 4.2 18.3 1.0
OD1 A:ASP129 4.3 18.6 1.0
CB A:ASP136 4.3 19.0 1.0
ND1 A:HIS142 4.4 18.4 1.0
CG A:HIS142 4.5 18.8 1.0
O A:HOH2170 4.5 20.8 1.0
O A:ILE150 4.5 19.6 1.0
CG A:GLU127 4.6 17.5 1.0
CD A:PRO137 4.6 22.6 1.0
NE1 A:TRP135 4.8 19.7 1.0
CA A:ASP136 4.8 20.4 1.0
CD1 A:TRP135 4.9 23.1 1.0

Reference:

C.Svensson, S.Teneberg, C.Nilsson, A.Kjellberg, F.Schwarz, N.Sharon, U.Krengel. High-Resolution Crystal Structures of Erythrina Cristagalli Lectin in Complex with Lactose and 2'-Alpha-L-Fucosyllactose and Correlation with Thermodynamic Binding Data J.Mol.Biol. V. 321 69 2002.
ISSN: ISSN 0022-2836
PubMed: 12139934
DOI: 10.1016/S0022-2836(02)00554-5
Page generated: Tue Dec 15 03:48:45 2020

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