Manganese in PDB 1gz9: High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose

The structure of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose, PDB code: 1gz9 was solved by C.Svensson, S.Teneberg, C.L.Nilsson, A.Kjellberg, F.P.Schwarz, N.Sharon, U.Krengel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.37 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	80.900, 80.900, 125.900, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 23.9

The structure of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Manganese atom in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose (pdb code 1gz9). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose, PDB code: 1gz9:

Manganese binding site 1 out of 1 in the High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Crystal Structure of Erythrina Cristagalli Lectin in Complex with 2'-Alpha-L-Fucosyllactose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn289 b:18.8 occ:1.00 OD1 A:ASP136 2.1 19.3 1.0 OD2 A:ASP129 2.2 16.8 1.0 OE2 A:GLU127 2.2 16.3 1.0 O A:HOH2203 2.2 16.8 1.0 NE2 A:HIS142 2.3 17.4 1.0 O A:HOH2204 2.3 18.2 1.0 CG A:ASP136 3.1 22.8 1.0 CD A:GLU127 3.2 16.3 1.0 CG A:ASP129 3.2 21.6 1.0 CE1 A:HIS142 3.2 20.1 1.0 CD2 A:HIS142 3.3 16.8 1.0 OE1 A:GLU127 3.5 19.3 1.0 CB A:ASP129 3.6 17.3 1.0 OD2 A:ASP136 3.7 19.6 1.0 O A:HOH2106 3.9 19.3 1.0 CA A:CA290 4.2 19.2 1.0 OG A:SER152 4.2 19.6 1.0 CB A:ASP136 4.3 20.1 1.0 OD1 A:ASP129 4.3 19.0 1.0 ND1 A:HIS142 4.4 17.8 1.0 O A:HOH2125 4.5 20.7 1.0 CG A:HIS142 4.5 17.3 1.0 CG A:GLU127 4.5 13.7 1.0 O A:ILE150 4.6 20.6 1.0 CD A:PRO137 4.6 23.0 1.0 NE1 A:TRP135 4.7 21.8 1.0 CA A:ASP136 4.8 21.1 1.0 CD1 A:TRP135 4.9 25.3 1.0

C.Svensson, S.Teneberg, C.L.Nilsson, A.Kjellberg, F.P.Schwarz, N.Sharon, U.Krengel. High-Resolution Crystal Structures of Erythrina Cristagalli Lectin in Complex with Lactose and 2'-Alpha-L-Fucosyllactose and Correlation with Thermodynamic Binding Data J.Mol.Biol. V. 321 69 2002.
ISSN: ISSN 0022-2836
PubMed: 12139934
DOI: 10.1016/S0022-2836(02)00554-5