Manganese in PDB 1gwv: Alpha-,1,3 Galactosyltransferase - Lactose Complex

All present enzymatic activity of Alpha-,1,3 Galactosyltransferase - Lactose Complex:
2.4.1.151;

The structure of Alpha-,1,3 Galactosyltransferase - Lactose Complex, PDB code: 1gwv was solved by E.Boix, Y.Zhang, G.J.Swaminathan, K.Brew, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.98 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.010, 93.978, 94.681, 90.00, 99.05, 90.00
R / Rfree (%)	19.9 / 24.7

The binding sites of Manganese atom in the Alpha-,1,3 Galactosyltransferase - Lactose Complex (pdb code 1gwv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Alpha-,1,3 Galactosyltransferase - Lactose Complex, PDB code: 1gwv:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Alpha-,1,3 Galactosyltransferase - Lactose Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Alpha-,1,3 Galactosyltransferase - Lactose Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1370 b:21.6 occ:1.00 O1B A:UDP1369 2.2 25.2 1.0 OD1 A:ASP227 2.2 18.0 1.0 O A:HOH2077 2.3 13.1 1.0 OD2 A:ASP225 2.5 13.3 1.0 OD2 A:ASP227 2.5 17.0 1.0 CG A:ASP227 2.7 15.9 1.0 O1A A:UDP1369 2.7 26.6 1.0 O3A A:UDP1369 3.2 24.1 1.0 CG A:ASP225 3.2 14.9 1.0 PB A:UDP1369 3.3 23.6 1.0 CB A:ASP225 3.4 16.1 1.0 PA A:UDP1369 3.5 23.2 1.0 O3B A:UDP1369 3.8 22.8 1.0 O3' A:UDP1369 3.8 20.1 1.0 NZ A:LYS359 3.8 11.0 1.0 C5' A:UDP1369 4.0 22.5 1.0 O5' A:UDP1369 4.1 24.0 1.0 CB A:ASP227 4.2 14.7 1.0 O A:HOH2050 4.2 14.1 1.0 OD1 A:ASP225 4.3 15.7 1.0 O A:HOH2076 4.4 21.1 1.0 C3' A:UDP1369 4.4 21.1 1.0 O A:HOH2066 4.5 12.3 1.0 O2B A:UDP1369 4.5 22.0 1.0 O A:HOH2080 4.6 26.6 1.0 O A:HOH2034 4.6 17.6 1.0 C4' A:UDP1369 4.7 22.2 1.0 CB A:ALA282 4.7 11.7 1.0 O2A A:UDP1369 4.9 23.8 1.0 CA A:ASP225 4.9 15.8 1.0 O A:ASP227 4.9 17.1 1.0 N A:ASP227 4.9 13.8 1.0 CA A:ASP227 5.0 15.5 1.0

Manganese binding site 2 out of 2 in the Alpha-,1,3 Galactosyltransferase - Lactose Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Alpha-,1,3 Galactosyltransferase - Lactose Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn1370 b:20.6 occ:1.00 OD1 B:ASP227 2.1 18.6 1.0 OD2 B:ASP225 2.1 17.2 1.0 O B:HOH2096 2.1 6.5 1.0 O1B B:UDP1369 2.2 22.1 1.0 O1A B:UDP1369 2.5 22.5 1.0 CG B:ASP227 2.7 18.4 1.0 OD2 B:ASP227 2.7 17.1 1.0 CG B:ASP225 3.0 15.2 1.0 PB B:UDP1369 3.3 24.0 1.0 CB B:ASP225 3.4 13.0 1.0 O3A B:UDP1369 3.4 21.9 1.0 PA B:UDP1369 3.5 21.4 1.0 O3B B:UDP1369 3.6 21.6 1.0 O3' B:UDP1369 3.8 27.9 1.0 NZ B:LYS359 3.9 1.6 1.0 OD1 B:ASP225 4.1 16.0 1.0 O B:HOH2087 4.2 4.9 1.0 CB B:ASP227 4.2 16.2 1.0 O5' B:UDP1369 4.4 23.1 1.0 O B:HOH2041 4.4 19.4 1.0 O B:HOH2093 4.5 26.0 1.0 C5' B:UDP1369 4.5 23.9 1.0 C3' B:UDP1369 4.6 23.8 1.0 O2B B:UDP1369 4.6 22.0 1.0 O B:HOH2042 4.6 14.9 1.0 O2A B:UDP1369 4.8 20.9 1.0 O B:ASP227 4.8 11.1 1.0 CB B:ALA282 4.8 6.7 1.0 CA B:ASP225 4.8 12.3 1.0 N B:ASP227 4.9 13.6 1.0 C4' B:UDP1369 4.9 24.1 1.0 CA B:ASP227 5.0 14.7 1.0

E.Boix, Y.Zhang, G.J.Swaminathan, K.Brew, K.R.Acharya. Structural Basis of Ordered Binding of Donor and Acceptor Substrates to the Retaining Glycosyltransferase, Alpha -1,3 Galactosyltransferase J.Biol.Chem. V. 277 28310 2002.
ISSN: ISSN 0021-9258
PubMed: 12011052
DOI: 10.1074/JBC.M202631200