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Manganese in PDB 1gn8: Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli

Enzymatic activity of Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli

All present enzymatic activity of Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli:
2.7.7.3;

Protein crystallography data

The structure of Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli, PDB code: 1gn8 was solved by T.Izard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.91 / 1.83
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 135.060, 135.060, 135.060, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 24.5

Manganese Binding Sites:

The binding sites of Manganese atom in the Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli (pdb code 1gn8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli, PDB code: 1gn8:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1gn8

Go back to Manganese Binding Sites List in 1gn8
Manganese binding site 1 out of 2 in the Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn802

b:50.7
occ:0.50
O1B A:ATP700 2.5 87.3 1.0
O1A A:ATP700 2.6 86.3 1.0
O2G A:ATP700 2.6 88.7 1.0
O3B A:ATP700 3.3 88.1 1.0
PB A:ATP700 3.4 87.3 1.0
PG A:ATP700 3.5 88.5 1.0
PA A:ATP700 3.7 85.9 1.0
O5' A:ATP700 3.9 85.4 1.0
NH1 A:ARG91 4.1 41.0 1.0
O3A A:ATP700 4.2 86.7 1.0
O3G A:ATP700 4.2 88.7 1.0
O A:HOH2115 4.2 55.4 1.0
O2B A:ATP700 4.6 87.6 1.0
O A:HOH2118 4.7 42.8 1.0
O A:HOH2117 4.7 49.1 1.0
O1G A:ATP700 4.9 88.8 1.0

Manganese binding site 2 out of 2 in 1gn8

Go back to Manganese Binding Sites List in 1gn8
Manganese binding site 2 out of 2 in the Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Phosphopantetheine Adenylyltransferase in Complex with MN2+Atp From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn801

b:57.5
occ:1.00
O1B B:ATP600 2.4 47.2 1.0
O1A B:ATP600 2.6 44.9 1.0
O2G B:ATP600 2.7 51.0 1.0
O3B B:ATP600 3.2 48.6 1.0
PB B:ATP600 3.3 46.3 1.0
PG B:ATP600 3.5 50.5 1.0
PA B:ATP600 3.7 44.5 1.0
O5' B:ATP600 3.9 44.7 1.0
O B:HOH2127 3.9 37.6 1.0
NH2 B:ARG91 4.0 48.4 1.0
O3A B:ATP600 4.1 45.9 1.0
O3G B:ATP600 4.1 49.9 1.0
O B:HOH2078 4.3 37.0 1.0
O2B B:ATP600 4.6 45.8 1.0
NZ B:LYS42 4.6 37.8 1.0
O1G B:ATP600 4.9 49.9 1.0

Reference:

T.Izard, T.Izard. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 11812124
DOI: 10.1006/JMBI.2001.5272
Page generated: Tue Dec 15 03:48:28 2020

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