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Manganese in PDB 1g0i: Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase

Enzymatic activity of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase

All present enzymatic activity of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase:
3.1.3.25;

Protein crystallography data

The structure of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase, PDB code: 1g0i was solved by K.A.Johnson, L.Chen, H.Yang, M.F.Roberts, B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.020, 78.450, 130.050, 90.00, 90.00, 90.00
R / Rfree (%) 25.1 / 33.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase (pdb code 1g0i). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase, PDB code: 1g0i:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in 1g0i

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Manganese binding site 1 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn290

b:39.1
occ:1.00
 OD1 A:ASP201 2.1 38.1 1.0
O1 A:PO4293 2.2 50.0 1.0
OD1 A:ASP84 2.3 16.6 1.0
OD1 A:ASP81 2.5 56.6 1.0
O3 A:PO4293 3.0 67.2 1.0
P A:PO4293 3.1 47.4 1.0
CG A:ASP201 3.2 30.5 1.0
CG A:ASP81 3.4 45.4 1.0
CG A:ASP84 3.4 28.1 1.0
MN A:MN291 3.7 36.6 1.0
O4 A:PO4293 3.7 40.1 1.0
OD2 A:ASP81 3.7 48.2 1.0
CA A:ASP84 3.8 42.2 1.0
CB A:ASP201 3.8 24.9 1.0
OE2 A:GLU65 3.9 44.2 1.0
NH2 A:ARG198 4.0 53.2 1.0
CB A:ASP84 4.0 35.3 1.0
N A:GLY85 4.2 45.4 1.0
CA A:ASP201 4.2 35.4 1.0
OD2 A:ASP201 4.2 13.2 1.0
O2 A:PO4293 4.3 29.6 1.0
C A:ASP84 4.5 42.9 1.0
O A:ILE83 4.5 18.2 1.0
OD2 A:ASP84 4.5 13.3 1.0
CB A:ASP81 4.6 40.6 1.0
N A:ASP84 4.8 42.8 1.0
N A:ASP201 4.9 29.5 1.0
CD A:GLU65 5.0 38.5 1.0

Manganese binding site 2 out of 6 in 1g0i

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Manganese binding site 2 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn291

b:36.6
occ:1.00
 O1 A:PO4293 1.8 50.0 1.0
O A:HOH635 2.1 14.1 1.0
O A:ILE83 2.2 18.2 1.0
OD2 A:ASP81 2.2 48.2 1.0
OE1 A:GLU65 2.3 26.7 1.0
OE2 A:GLU65 2.5 44.2 1.0
O2 A:PO4293 2.5 29.6 1.0
P A:PO4293 2.7 47.4 1.0
CD A:GLU65 2.8 38.5 1.0
CG A:ASP81 3.0 45.4 1.0
OD1 A:ASP81 3.1 56.6 1.0
C A:ILE83 3.3 30.6 1.0
MN A:MN290 3.7 39.1 1.0
O3 A:PO4293 3.7 67.2 1.0
O4 A:PO4293 3.7 40.1 1.0
OG A:SER86 4.0 48.8 1.0
O A:HOH634 4.0 18.7 1.0
N A:ASP84 4.1 42.8 1.0
CA A:ASP84 4.1 42.2 1.0
N A:ILE83 4.1 14.4 1.0
CG A:GLU65 4.2 37.9 1.0
CA A:ILE83 4.3 25.8 1.0
MN A:MN292 4.4 60.5 1.0
CB A:ASP81 4.4 40.6 1.0
N A:GLY85 4.5 45.4 1.0
OE1 A:GLU66 4.6 5.4 1.0
CB A:GLU65 4.6 34.4 1.0
OD1 A:ASP44 4.6 37.0 1.0
C A:ASP84 4.8 42.9 1.0
C A:ASP81 4.8 26.2 1.0
CA A:ASP81 4.8 30.5 1.0
CD A:PRO82 4.8 10.0 1.0
N A:PRO82 4.9 22.5 1.0
CB A:ILE83 4.9 26.8 1.0
NH2 A:ARG198 5.0 53.2 1.0

Manganese binding site 3 out of 6 in 1g0i

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Manganese binding site 3 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn292

b:60.5
occ:1.00
 O2 A:PO4293 2.2 29.6 1.0
O A:HOH634 2.5 18.7 1.0
OD1 A:ASP38 2.9 95.7 1.0
O3 A:PO4293 2.9 67.2 1.0
P A:PO4293 3.1 47.4 1.0
OE2 A:GLU65 3.2 44.2 1.0
CD A:GLU65 3.5 38.5 1.0
CG A:ASP38 3.7 78.6 1.0
O4 A:PO4293 3.9 40.1 1.0
NH2 A:ARG198 4.0 53.2 1.0
OE1 A:GLU65 4.0 26.7 1.0
CB A:ASP38 4.1 66.7 1.0
NH1 A:ARG198 4.2 56.2 1.0
O1 A:PO4293 4.3 50.0 1.0
MN A:MN291 4.4 36.6 1.0
O A:HOH636 4.4 65.9 1.0
CG A:GLU65 4.5 37.9 1.0
OD2 A:ASP38 4.5 90.7 1.0
CZ A:ARG198 4.6 56.1 1.0
OG A:SER86 4.9 48.8 1.0

Manganese binding site 4 out of 6 in 1g0i

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Manganese binding site 4 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn590

b:19.4
occ:1.00
 O2 B:PO4593 2.1 18.8 1.0
O B:ILE383 2.2 0.0 1.0
O B:HOH644 2.3 10.2 1.0
OE2 B:GLU365 2.3 41.0 1.0
O3 B:PO4593 2.4 31.4 1.0
OD2 B:ASP381 2.5 46.5 1.0
P B:PO4593 2.8 34.9 1.0
CD B:GLU365 2.8 43.2 1.0
OE1 B:GLU365 2.9 45.5 1.0
O B:HOH645 3.3 6.5 1.0
C B:ILE383 3.3 10.3 1.0
CG B:ASP381 3.4 45.5 1.0
OD1 B:ASP381 3.5 50.1 1.0
O4 B:PO4593 3.7 58.8 1.0
OG B:SER386 3.8 28.3 1.0
OE1 B:GLU366 3.8 15.8 1.0
MN B:MN591 3.9 38.7 1.0
OD1 B:ASP344 3.9 24.0 1.0
N B:ILE383 3.9 8.8 1.0
MN B:MN592 3.9 45.3 1.0
O1 B:PO4593 3.9 25.4 1.0
CA B:ILE383 4.1 11.2 1.0
CG B:GLU365 4.2 41.3 1.0
N B:ASP384 4.4 18.1 1.0
CG2 B:ILE383 4.4 17.1 1.0
CA B:ASP384 4.5 18.8 1.0
CB B:ILE383 4.5 11.9 1.0
CD B:PRO382 4.6 11.7 1.0
CB B:GLU365 4.6 35.0 1.0
N B:GLY385 4.6 37.8 1.0
NH2 B:ARG498 4.7 83.9 1.0
N B:PRO382 4.8 17.9 1.0
CB B:ASP381 4.8 42.9 1.0
CG B:ASP344 4.8 28.7 1.0
C B:ASP381 4.8 26.2 1.0
CD B:GLU366 5.0 33.2 1.0

Manganese binding site 5 out of 6 in 1g0i

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Manganese binding site 5 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn591

b:38.7
occ:1.00
 OD1 B:ASP381 1.9 50.1 1.0
OD1 B:ASP501 2.1 45.1 1.0
OD1 B:ASP384 2.1 7.5 1.0
O2 B:PO4593 2.1 18.8 1.0
O B:HOH629 2.2 31.0 1.0
CG B:ASP381 2.9 45.5 1.0
P B:PO4593 3.2 34.9 1.0
O1 B:PO4593 3.2 25.4 1.0
CG B:ASP384 3.2 17.4 1.0
CG B:ASP501 3.3 44.1 1.0
OE2 B:GLU365 3.4 41.0 1.0
CA B:ASP384 3.4 18.8 1.0
OD2 B:ASP381 3.5 46.5 1.0
CB B:ASP384 3.7 18.0 1.0
MN B:MN590 3.9 19.4 1.0
O B:ILE383 4.0 0.0 1.0
O4 B:PO4593 4.0 58.8 1.0
NH2 B:ARG498 4.0 83.9 1.0
CB B:ASP381 4.0 42.9 1.0
CB B:ASP501 4.0 41.7 1.0
N B:GLY385 4.1 37.8 1.0
OD2 B:ASP501 4.2 55.1 1.0
C B:ASP384 4.2 26.2 1.0
CA B:ASP501 4.3 40.5 1.0
OD2 B:ASP384 4.3 28.6 1.0
O3 B:PO4593 4.4 31.4 1.0
N B:ASP384 4.5 18.1 1.0
CD B:GLU365 4.6 43.2 1.0
C B:ILE383 4.6 10.3 1.0

Manganese binding site 6 out of 6 in 1g0i

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Manganese binding site 6 out of 6 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn592

b:45.3
occ:1.00
 O3 B:PO4593 1.8 31.4 1.0
O B:HOH645 2.3 6.5 1.0
P B:PO4593 2.9 34.9 1.0
OD1 B:ASP338 2.9 60.6 1.0
O1 B:PO4593 3.0 25.4 1.0
OE1 B:GLU365 3.3 45.5 1.0
OE2 B:GLU365 3.4 41.0 1.0
NH2 B:ARG498 3.5 83.9 1.0
CB B:ASP338 3.6 55.9 1.0
CD B:GLU365 3.6 43.2 1.0
CG B:ASP338 3.7 60.1 1.0
O4 B:PO4593 3.8 58.8 1.0
MN B:MN590 3.9 19.4 1.0
NH1 B:ARG498 3.9 53.8 1.0
O2 B:PO4593 4.0 18.8 1.0
OG B:SER386 4.1 28.3 1.0
CZ B:ARG498 4.2 62.8 1.0
OE1 B:GLU366 4.7 15.8 1.0
CB B:SER386 4.8 40.2 1.0
CG B:GLU365 4.9 41.3 1.0
OD2 B:ASP338 4.9 59.7 1.0
O B:GLU339 5.0 60.7 1.0
OE2 B:GLU366 5.0 12.6 1.0

Reference:

K.A.Johnson, L.Chen, H.Yang, M.F.Roberts, B.Stec. Crystal Structure and Catalytic Mechanism of the MJ0109 Gene Product: A Bifunctional Enzyme with Inositol Monophosphatase and Fructose 1,6-Bisphosphatase Activities. Biochemistry V. 40 618 2001.
ISSN: ISSN 0006-2960
PubMed: 11170378
DOI: 10.1021/BI0016422
Page generated: Sat Oct 5 10:27:59 2024

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