Manganese in PDB 1fx5: Crystal Structure Analysis of Ulex Europaeus Lectin I

The structure of Crystal Structure Analysis of Ulex Europaeus Lectin I, PDB code: 1fx5 was solved by G.F.Audette, M.Vandonselaar, L.T.J.Delbaere, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	79.610, 70.670, 122.150, 90.00, 108.60, 90.00
R / Rfree (%)	17.1 / 21.7

The structure of Crystal Structure Analysis of Ulex Europaeus Lectin I also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Crystal Structure Analysis of Ulex Europaeus Lectin I (pdb code 1fx5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure Analysis of Ulex Europaeus Lectin I, PDB code: 1fx5:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure Analysis of Ulex Europaeus Lectin I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure Analysis of Ulex Europaeus Lectin I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn250 b:14.2 occ:1.00 O A:HOH1007 2.1 13.0 1.0 OD2 A:ASP138 2.1 14.4 1.0 OD1 A:ASP128 2.2 12.6 1.0 OE1 A:GLU126 2.2 12.7 1.0 O A:HOH1015 2.2 9.8 1.0 NE2 A:HIS143 2.4 18.4 1.0 CG A:ASP138 3.0 18.1 1.0 CE1 A:HIS143 3.2 17.8 1.0 CD A:GLU126 3.2 14.8 1.0 CG A:ASP128 3.2 13.1 1.0 OD1 A:ASP138 3.4 15.7 1.0 OE2 A:GLU126 3.5 16.9 1.0 CD2 A:HIS143 3.5 15.8 1.0 CB A:ASP128 3.7 12.5 1.0 O A:HOH1008 3.9 12.0 1.0 CA A:CA251 4.2 12.6 1.0 CB A:ASP138 4.2 12.4 1.0 OD2 A:ASP128 4.3 14.9 1.0 OG A:SER153 4.4 12.5 1.0 ND1 A:HIS143 4.4 13.0 1.0 O A:VAL151 4.4 14.8 1.0 CG A:GLU126 4.5 10.1 1.0 CG A:HIS143 4.6 16.4 1.0 O A:HOH1052 4.6 22.1 1.0 CA A:ASP138 4.8 15.4 1.0 CD1 A:TRP137 4.9 15.3 1.0 NE1 A:TRP137 4.9 14.9 1.0

Manganese binding site 2 out of 2 in the Crystal Structure Analysis of Ulex Europaeus Lectin I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure Analysis of Ulex Europaeus Lectin I within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn250 b:43.8 occ:1.00 OD2 B:ASP128 2.1 43.4 1.0 O B:HOH2007 2.2 27.0 1.0 OD2 B:ASP138 2.2 52.3 1.0 O B:HOH2015 2.2 39.9 1.0 NE2 B:HIS143 2.4 35.2 1.0 OE1 B:GLU126 2.6 44.2 1.0 CG B:ASP138 3.1 51.5 1.0 CE1 B:HIS143 3.1 36.7 1.0 OE2 B:GLU126 3.2 34.9 1.0 CG B:ASP128 3.2 44.7 1.0 CD B:GLU126 3.2 40.7 1.0 OD1 B:ASP138 3.4 49.5 1.0 CD2 B:HIS143 3.7 37.0 1.0 CB B:ASP128 3.7 44.4 1.0 O B:HOH2008 4.1 46.9 1.0 OG B:SER153 4.2 50.8 1.0 OD1 B:ASP128 4.3 45.3 1.0 O B:VAL151 4.4 50.6 1.0 CA B:CA251 4.4 50.2 1.0 CB B:ASP138 4.4 54.5 1.0 ND1 B:HIS143 4.4 37.2 1.0 NE1 B:TRP137 4.6 57.3 1.0 CG B:HIS143 4.7 39.2 1.0 CD1 B:TRP137 4.7 58.4 1.0 CG B:GLU126 4.7 40.8 1.0 CA B:ASP138 4.9 57.0 1.0

G.F.Audette, M.Vandonselaar, L.T.Delbaere. The 2.2 A Resolution Structure of the O(H) Blood-Group-Specific Lectin I From Ulex Europaeus. J.Mol.Biol. V. 304 423 2000.
ISSN: ISSN 0022-2836
PubMed: 11090284
DOI: 10.1006/JMBI.2000.4214