Atomistry » Manganese » PDB 1en6-1g0i » 1fx5
Atomistry »
  Manganese »
    PDB 1en6-1g0i »
      1fx5 »

Manganese in PDB 1fx5: Crystal Structure Analysis of Ulex Europaeus Lectin I

Protein crystallography data

The structure of Crystal Structure Analysis of Ulex Europaeus Lectin I, PDB code: 1fx5 was solved by G.F.Audette, M.Vandonselaar, L.T.J.Delbaere, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 79.610, 70.670, 122.150, 90.00, 108.60, 90.00
R / Rfree (%) 17.1 / 21.7

Other elements in 1fx5:

The structure of Crystal Structure Analysis of Ulex Europaeus Lectin I also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure Analysis of Ulex Europaeus Lectin I (pdb code 1fx5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure Analysis of Ulex Europaeus Lectin I, PDB code: 1fx5:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1fx5

Go back to Manganese Binding Sites List in 1fx5
Manganese binding site 1 out of 2 in the Crystal Structure Analysis of Ulex Europaeus Lectin I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure Analysis of Ulex Europaeus Lectin I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn250

b:14.2
occ:1.00
O A:HOH1007 2.1 13.0 1.0
OD2 A:ASP138 2.1 14.4 1.0
OD1 A:ASP128 2.2 12.6 1.0
OE1 A:GLU126 2.2 12.7 1.0
O A:HOH1015 2.2 9.8 1.0
NE2 A:HIS143 2.4 18.4 1.0
CG A:ASP138 3.0 18.1 1.0
CE1 A:HIS143 3.2 17.8 1.0
CD A:GLU126 3.2 14.8 1.0
CG A:ASP128 3.2 13.1 1.0
OD1 A:ASP138 3.4 15.7 1.0
OE2 A:GLU126 3.5 16.9 1.0
CD2 A:HIS143 3.5 15.8 1.0
CB A:ASP128 3.7 12.5 1.0
O A:HOH1008 3.9 12.0 1.0
CA A:CA251 4.2 12.6 1.0
CB A:ASP138 4.2 12.4 1.0
OD2 A:ASP128 4.3 14.9 1.0
OG A:SER153 4.4 12.5 1.0
ND1 A:HIS143 4.4 13.0 1.0
O A:VAL151 4.4 14.8 1.0
CG A:GLU126 4.5 10.1 1.0
CG A:HIS143 4.6 16.4 1.0
O A:HOH1052 4.6 22.1 1.0
CA A:ASP138 4.8 15.4 1.0
CD1 A:TRP137 4.9 15.3 1.0
NE1 A:TRP137 4.9 14.9 1.0

Manganese binding site 2 out of 2 in 1fx5

Go back to Manganese Binding Sites List in 1fx5
Manganese binding site 2 out of 2 in the Crystal Structure Analysis of Ulex Europaeus Lectin I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure Analysis of Ulex Europaeus Lectin I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn250

b:43.8
occ:1.00
OD2 B:ASP128 2.1 43.4 1.0
O B:HOH2007 2.2 27.0 1.0
OD2 B:ASP138 2.2 52.3 1.0
O B:HOH2015 2.2 39.9 1.0
NE2 B:HIS143 2.4 35.2 1.0
OE1 B:GLU126 2.6 44.2 1.0
CG B:ASP138 3.1 51.5 1.0
CE1 B:HIS143 3.1 36.7 1.0
OE2 B:GLU126 3.2 34.9 1.0
CG B:ASP128 3.2 44.7 1.0
CD B:GLU126 3.2 40.7 1.0
OD1 B:ASP138 3.4 49.5 1.0
CD2 B:HIS143 3.7 37.0 1.0
CB B:ASP128 3.7 44.4 1.0
O B:HOH2008 4.1 46.9 1.0
OG B:SER153 4.2 50.8 1.0
OD1 B:ASP128 4.3 45.3 1.0
O B:VAL151 4.4 50.6 1.0
CA B:CA251 4.4 50.2 1.0
CB B:ASP138 4.4 54.5 1.0
ND1 B:HIS143 4.4 37.2 1.0
NE1 B:TRP137 4.6 57.3 1.0
CG B:HIS143 4.7 39.2 1.0
CD1 B:TRP137 4.7 58.4 1.0
CG B:GLU126 4.7 40.8 1.0
CA B:ASP138 4.9 57.0 1.0

Reference:

G.F.Audette, M.Vandonselaar, L.T.Delbaere. The 2.2 A Resolution Structure of the O(H) Blood-Group-Specific Lectin I From Ulex Europaeus. J.Mol.Biol. V. 304 423 2000.
ISSN: ISSN 0022-2836
PubMed: 11090284
DOI: 10.1006/JMBI.2000.4214
Page generated: Sat Oct 5 10:27:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy