Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
      1fe1
      1ffg
      1ffs
      1ffw
      1fgg
      1fi2
      1fjm
      1foa
      1fpd
      1fpe
      1fpf
      1fpg
      1fpy
      1fqw
      1frw
      1fsa
      1fui
      1fx5
      1fyu
      1g0i
      1g15
      1g5b
      1g7y
      1g8o
      1g8w
      1g93
      1g9f
      1g9r
      1ga8
      1gg1
      1gic
      1gkb
      1gld
      1gn4
      1gn8
      1gq2
      1gq6
      1gq7
      1gsl
      1gv3
      1gwv
      1gww
      1gx0
      1gx1
      1gx4
      1gx5
      1gx6
      1gz3
      1gz4
      1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Structural Aspects Of The Allosteric Inhibition Of Fructose-1,6- Bisphosphatase By Amp: The Binding of Both the Substrate Analogue 2, 5-Anhydro-D-Glucitol-1,6-Bisphosphate and Catalytic Metal Ions Monitored By X-Ray Crystallography (pdb 1fpd)






The binding sites of Manganese atom in the structure of Structural Aspects Of The Allosteric Inhibition Of Fructose-1,6- Bisphosphatase By Amp: The Binding of Both the Substrate Analogue 2, 5-Anhydro-D-Glucitol-1,6-Bisphosphate and Catalytic Metal Ions Monitored By X-Ray Crystallography (pdb code 1fpd). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1fpd structure was solved by V.VILLERET, S.HUANG, Y.ZHANG, W.N.LIPSCOMB, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-2.1
Space groupP21212
a (A)61.100
b (A)166.400
c (A)79.900
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.1
Rfree (%)n/a


Manganese Binding Sites:

Manganese binding site 1 out of 4 in 1fpd


Manganese binding site 1 out of 4 in 1fpd
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stereopicture of Manganese binding site 1 out of 4 in 1fpd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1fpd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu97, A: Asp118, A: Leu120, A: Asp121, A: Gly122, A: Arg276, A: Glu280, A: Mn337, A: Ahg338,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu973.97
MnOE2 A:Glu972.50
MnCD A:Glu973.56
MnCG A:Glu974.83
MnCB A:Asp1184.63
MnOD2 A:Asp1182.27
MnOD1 A:Asp1183.85
MnCG A:Asp1183.38
MnO A:Leu1204.94
MnCB A:Asp1213.93
MnOD2 A:Asp1214.38
MnC A:Asp1214.87
MnOD1 A:Asp1212.17
MnCG A:Asp1213.34
MnCA A:Asp1214.05
MnH A:Gly1223.67
MnN A:Gly1224.52
MnHH22 A:Arg2763.32
MnHH21 A:Arg2764.06
MnHH12 A:Arg2763.99
MnNH2 A:Arg2763.65
MnNH1 A:Arg2764.26
MnHH11 A:Arg2764.98
MnCZ A:Arg2764.13
MnOE1 A:Glu2804.32
MnOE2 A:Glu2802.30
MnCD A:Glu2803.54
MnCG A:Glu2804.47
MnMN A:Mn3374.13
MnP1 A:Ahg3383.20
MnC1 A:Ahg3384.19
MnO1 A:Ahg3383.98
MnH11 A:Ahg3383.47
MnC2 A:Ahg3384.78
MnO3P A:Ahg3382.92
MnH2 A:Ahg3384.28
MnO1P A:Ahg3382.38
MnO2P A:Ahg3384.56

interactive model:


Manganese binding site 2 out of 4 in 1fpd


Manganese binding site 2 out of 4 in 1fpd
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stereopicture of Manganese binding site 2 out of 4 in 1fpd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1fpd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu97, A: Glu98, A: Asp118, A: Pro119, A: Leu120, A: Asp121, A: Gly122, A: Ser123, A: Mn336, A: Ahg338,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu972.58
MnCB A:Glu974.41
MnOE2 A:Glu973.64
MnCD A:Glu973.29
MnCG A:Glu974.38
MnOE2 A:Glu983.02
MnCD A:Glu984.16
MnCG A:Glu984.69
MnCB A:Asp1184.76
MnOD2 A:Asp1183.78
MnOD1 A:Asp1182.42
MnCG A:Asp1183.45
MnCA A:Asp1184.94
MnN A:Pro1194.83
MnCD A:Pro1194.41
MnCG A:Pro1194.58
MnO A:Leu1202.76
MnN A:Leu1204.11
MnCB A:Leu1204.88
MnH A:Leu1203.28
MnC A:Leu1203.64
MnCA A:Leu1204.44
MnN A:Asp1214.38
MnCA A:Asp1214.45
MnH A:Gly1224.90
MnHG A:Ser1233.67
MnH A:Ser1234.84
MnOG A:Ser1234.31
MnMN A:Mn3364.13
MnO1P A:Ahg3384.41

interactive model:


Manganese binding site 3 out of 4 in 1fpd


Manganese binding site 3 out of 4 in 1fpd
Click to enlarge
stereopicture of Manganese binding site 3 out of 4 in 1fpd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1fpd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu97, B: Asp118, B: Leu120, B: Asp121, B: Gly122, B: Arg276, B: Glu280, B: Mn337, B: Ahg338, B: Hoh386, B: Hoh405,

conact list:


AtomAtomDistance (A)
MnOE1 B:Glu972.80
MnOE2 B:Glu972.66
MnCD B:Glu973.08
MnCG B:Glu974.55
MnCB B:Asp1184.48
MnOD2 B:Asp1182.23
MnOD1 B:Asp1183.46
MnCG B:Asp1183.17
MnO B:Leu1204.91
MnN B:Asp1214.99
MnCB B:Asp1213.81
MnOD2 B:Asp1214.36
MnC B:Asp1214.88
MnOD1 B:Asp1212.15
MnCG B:Asp1213.27
MnCA B:Asp1213.99
MnH B:Gly1223.75
MnN B:Gly1224.59
MnHH12 B:Arg2763.70
MnNH1 B:Arg2764.18
MnHH11 B:Arg2764.04
MnOE1 B:Glu2804.33
MnOE2 B:Glu2802.28
MnCD B:Glu2803.48
MnCG B:Glu2804.31
MnMN B:Mn3374.22
MnP1 B:Ahg3383.41
MnC1 B:Ahg3384.85
MnO1 B:Ahg3383.61
MnH3 B:Ahg3384.97
MnHO3 B:Ahg3384.37
MnO3P B:Ahg3383.77
MnH2 B:Ahg3384.71
MnO1P B:Ahg3382.43
MnO2P B:Ahg3384.81
MnH2 B:Hoh3864.31
MnO B:Hoh4053.49
MnH1 B:Hoh4052.88
MnH2 B:Hoh4054.20

interactive model:


Manganese binding site 4 out of 4 in 1fpd


Manganese binding site 4 out of 4 in 1fpd
Click to enlarge
stereopicture of Manganese binding site 4 out of 4 in 1fpd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1fpd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp74, B: Glu97, B: Glu98, B: Asp118, B: Pro119, B: Leu120, B: Asp121, B: Ser123, B: Mn336, B: Ahg338, B: Hoh386,

conact list:


AtomAtomDistance (A)
MnCB B:Asp744.86
MnOE1 B:Glu974.71
MnCB B:Glu974.45
MnOE2 B:Glu972.94
MnCD B:Glu973.79
MnCG B:Glu974.20
MnOE1 B:Glu984.94
MnOE2 B:Glu982.78
MnCD B:Glu984.02
MnCG B:Glu984.75
MnCB B:Asp1184.78
MnOD2 B:Asp1184.08
MnC B:Asp1184.77
MnOD1 B:Asp1182.38
MnCG B:Asp1183.55
MnCA B:Asp1184.82
MnN B:Pro1194.51
MnCD B:Pro1194.16
MnC B:Pro1194.84
MnCG B:Pro1194.14
MnO B:Leu1202.64
MnN B:Leu1203.70
MnCB B:Leu1204.64
MnH B:Leu1202.83
MnC B:Leu1203.42
MnCA B:Leu1204.11
MnN B:Asp1214.21
MnH B:Asp1214.98
MnCA B:Asp1214.39
MnHG B:Ser1233.89
MnH B:Ser1234.98
MnOG B:Ser1234.50
MnMN B:Mn3364.22
MnO1P B:Ahg3384.09
MnO B:Hoh3862.96
MnH1 B:Hoh3862.75
MnH2 B:Hoh3863.12

interactive model:




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