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Manganese in PDB 1e9g: Structure of Inorganic Pyrophosphatase

Enzymatic activity of Structure of Inorganic Pyrophosphatase

All present enzymatic activity of Structure of Inorganic Pyrophosphatase:
3.6.1.1;

Protein crystallography data

The structure of Structure of Inorganic Pyrophosphatase, PDB code: 1e9g was solved by P.Heikinheimo, V.Tuominen, A.-K.Ahonen, A.Teplyakov, B.S.Cooperman, A.A.Baykov, R.Lahti, A.Goldman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.318, 103.087, 116.518, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Inorganic Pyrophosphatase (pdb code 1e9g). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 9 binding sites of Manganese where determined in the Structure of Inorganic Pyrophosphatase, PDB code: 1e9g:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Manganese binding site 1 out of 9 in 1e9g

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Manganese binding site 1 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1001

b:8.6
occ:1.00
 OD1 A:ASP152 2.1 9.6 1.0
OD2 A:ASP120 2.1 8.4 1.0
O2 A:PO43002 2.2 7.2 0.3
OD2 A:ASP115 2.2 8.8 0.6
O2 A:PO43002 2.2 10.2 0.7
O A:HOH2507 2.2 8.9 1.0
O A:HOH2523 2.2 10.7 0.7
OD2 A:ASP115 2.2 7.6 0.4
O4 A:PO43002 2.4 9.4 0.3
P A:PO43002 2.8 8.8 0.3
CG A:ASP120 3.1 7.0 1.0
CG A:ASP152 3.1 9.4 1.0
CG A:ASP115 3.2 8.3 0.4
CG A:ASP115 3.2 8.3 0.6
P A:PO43002 3.3 8.3 0.7
HZ1 A:LYS154 3.3 19.4 1.0
O4 A:PO43002 3.3 9.7 0.7
OD1 A:ASP120 3.4 8.5 1.0
OD2 A:ASP152 3.5 8.7 1.0
O1 A:PO43002 3.5 7.3 0.3
OD1 A:ASP115 3.6 9.6 0.6
OD1 A:ASP115 3.7 11.5 0.4
O A:HOH2519 3.7 10.0 1.0
HB2 A:ASP117 3.7 10.9 0.4
MN A:MN1002 3.7 9.1 1.0
MN A:MN1004 3.7 9.0 1.0
HZ2 A:LYS154 3.8 19.4 1.0
HB2 A:ASP117 3.8 11.5 0.6
O3 A:PO43002 3.9 10.9 0.7
NZ A:LYS154 3.9 13.0 1.0
HZ3 A:LYS154 4.0 19.4 1.0
O3 A:PO43002 4.1 7.9 0.3
O A:HOH2272 4.1 10.3 1.0
HH A:TYR93 4.1 15.0 1.0
HB3 A:ASP117 4.2 10.9 0.4
OD2 A:ASP117 4.2 12.5 0.4
HA A:ASP152 4.2 9.7 1.0
CB A:ASP117 4.4 9.1 0.4
HB3 A:ASP117 4.4 11.5 0.6
CB A:ASP115 4.4 8.4 0.4
CB A:ASP152 4.4 8.2 1.0
CB A:ASP120 4.4 7.8 1.0
CB A:ASP115 4.5 8.6 0.6
O A:HOH2509 4.5 9.6 1.0
HB2 A:ASP115 4.5 10.1 0.4
HB3 A:ASP115 4.5 10.1 0.4
HB2 A:ASP120 4.5 9.3 1.0
O1 A:PO43002 4.6 9.1 0.7
CB A:ASP117 4.6 9.6 0.6
O A:PRO118 4.6 8.1 0.4
OH A:TYR93 4.6 10.0 1.0
HG3 A:GLU101 4.6 10.6 1.0
O A:PRO118 4.6 8.7 0.6
OD2 A:ASP117 4.6 13.8 0.6
HB2 A:ASP115 4.7 10.3 0.6
HB3 A:ASP115 4.7 10.3 0.6
CG A:ASP117 4.7 9.4 0.4
O A:HOH2518 4.8 9.8 1.0
HB2 A:ASP152 4.8 9.8 1.0
CA A:ASP152 4.8 8.1 1.0
HB3 A:ASP120 4.9 9.3 1.0
H A:ASP120 5.0 9.7 1.0
O1 A:PO43001 5.0 5.5 0.7

Manganese binding site 2 out of 9 in 1e9g

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Manganese binding site 2 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1002

b:9.1
occ:1.00
 O1 A:PO43002 2.1 7.3 0.3
O A:HOH2510 2.1 10.9 1.0
O A:HOH2509 2.1 9.6 1.0
OD1 A:ASP120 2.2 8.5 1.0
O4 A:PO43002 2.2 9.4 0.3
O4 A:PO43002 2.2 9.7 0.7
O A:HOH2508 2.2 17.0 1.0
O A:HOH2523 2.4 10.7 0.7
P A:PO43002 2.6 8.8 0.3
CG A:ASP120 3.2 7.0 1.0
HH A:TYR93 3.3 15.0 1.0
P A:PO43002 3.4 8.3 0.7
HE2 A:TYR93 3.6 9.2 1.0
O3 A:PO43002 3.6 7.9 0.3
O3 A:PO43002 3.6 10.9 0.7
OD2 A:ASP120 3.6 8.4 1.0
MN A:MN1001 3.7 8.6 1.0
HB3 A:ASP117 3.8 10.9 0.4
O2 A:PO43002 3.8 7.2 0.3
HB3 A:ASP117 3.9 11.5 0.6
O A:HOH2154 3.9 10.2 1.0
OH A:TYR93 4.0 10.0 1.0
O2 A:PO43002 4.0 10.2 0.7
HB2 A:ALA95 4.1 17.1 1.0
OD2 A:ASP117 4.2 12.5 0.4
HZ2 A:LYS56 4.2 32.7 1.0
O A:PRO118 4.2 8.7 0.6
O A:HOH2507 4.2 8.9 1.0
HA A:ASP120 4.3 9.8 1.0
OE1 A:GLU48 4.3 9.5 1.0
CE2 A:TYR93 4.3 7.7 1.0
O A:PRO118 4.3 8.1 0.4
OD2 A:ASP117 4.4 13.8 0.6
CB A:ASP120 4.4 7.8 1.0
O A:HOH2180 4.4 12.3 1.0
HB3 A:ASP120 4.5 9.3 1.0
HZ1 A:LYS56 4.6 32.7 1.0
O1 A:PO43002 4.6 9.1 0.7
CB A:ASP117 4.6 9.6 0.6
HB2 A:ASP117 4.6 11.5 0.6
CZ A:TYR93 4.6 8.2 1.0
CB A:ASP117 4.6 9.1 0.4
OE2 A:GLU48 4.6 10.5 1.0
CG A:ASP117 4.6 9.2 0.6
O A:HOH2173 4.7 10.7 1.0
NZ A:LYS56 4.7 21.8 1.0
O A:GLY94 4.7 8.2 1.0
HB2 A:ASP117 4.7 10.9 0.4
HD2 A:PRO118 4.8 11.0 0.6
CG A:ASP117 4.8 9.4 0.4
CA A:ASP120 4.8 8.2 1.0
HZ3 A:LYS56 4.8 32.7 1.0
HD2 A:PRO118 4.9 10.5 0.4
HB2 A:PRO118 4.9 10.1 0.6
CD A:GLU48 4.9 8.6 1.0
HB2 A:GLU58 4.9 11.4 0.5

Manganese binding site 3 out of 9 in 1e9g

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Manganese binding site 3 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1003

b:11.2
occ:0.70
 MN A:MN1003 0.0 11.2 0.7
MN A:MN1003 2.0 8.7 0.3
O4 A:PO43001 2.1 10.3 0.7
O3 A:PO43002 2.2 7.9 0.3
O A:HOH2511 2.2 17.9 1.0
O A:HOH2514 2.2 13.4 1.0
O A:HOH2517 2.2 13.2 0.5
O3 A:PO43002 2.3 10.9 0.7
OE2 A:GLU58 2.3 9.3 0.6
O4 A:PO43001 2.7 9.9 0.3
HZ3 A:LYS56 3.0 32.7 1.0
O3 A:PO43001 3.2 9.9 0.3
CD A:GLU58 3.3 8.8 0.6
P A:PO43001 3.3 11.0 0.7
O1 A:PO43001 3.3 5.5 0.7
O A:HOH2512 3.4 45.5 1.0
P A:PO43001 3.5 10.7 0.3
HZ2 A:LYS56 3.5 32.7 1.0
OE1 A:GLU58 3.5 14.9 0.5
HH12 A:ARG78 3.6 15.4 1.0
O A:HOH2513 3.6 17.9 0.5
OE1 A:GLU58 3.6 10.6 0.6
P A:PO43002 3.6 8.8 0.3
NZ A:LYS56 3.6 21.8 1.0
P A:PO43002 3.6 8.3 0.7
HE3 A:LYS56 3.8 21.7 1.0
OD2 A:ASP117 3.9 12.5 0.4
O1 A:PO43001 3.9 12.9 0.3
O A:HOH2516 3.9 26.0 0.5
O A:HOH2515 4.1 24.9 0.7
O1 A:PO43002 4.1 9.1 0.7
O4 A:PO43002 4.1 9.4 0.3
O A:HOH2287 4.2 18.6 1.0
O2 A:PO43002 4.2 7.2 0.3
O3 A:PO43001 4.2 8.8 0.7
OD2 A:ASP117 4.2 13.8 0.6
CE A:LYS56 4.3 18.1 1.0
NH1 A:ARG78 4.3 12.8 1.0
O2 A:PO43001 4.3 11.4 0.7
O A:HOH2523 4.3 10.7 0.7
O2 A:PO43002 4.4 10.2 0.7
HH11 A:ARG78 4.4 15.4 1.0
CD A:GLU58 4.4 9.3 0.5
HZ1 A:LYS56 4.4 32.7 1.0
OD2 A:ASP71 4.4 13.0 1.0
CG A:GLU58 4.6 10.2 0.6
O A:HOH2508 4.6 17.0 1.0
OE2 A:GLU58 4.6 14.5 0.5
O A:HOH2175 4.6 35.8 1.0
HG2 A:GLU58 4.6 12.3 0.6
O1 A:PO43002 4.7 7.3 0.3
O4 A:PO43002 4.7 9.7 0.7
HD2 A:LYS56 4.7 14.6 1.0
O2 A:PO43001 4.8 15.3 0.3
O A:HOH2519 5.0 10.0 1.0
MN A:MN1004 5.0 9.0 1.0
O A:HOH2185 5.0 19.0 1.0

Manganese binding site 4 out of 9 in 1e9g

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Manganese binding site 4 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1003

b:8.7
occ:0.29
 MN A:MN1003 0.0 8.7 0.3
O A:HOH2517 1.5 13.2 0.5
MN A:MN1003 2.0 11.2 0.7
O A:HOH2514 2.1 13.4 1.0
O A:HOH2513 2.1 17.9 0.5
O A:HOH2516 2.2 26.0 0.5
O4 A:PO43001 2.2 9.9 0.3
O A:HOH2515 2.3 24.9 0.7
O A:HOH2512 2.4 45.5 1.0
O4 A:PO43001 2.5 10.3 0.7
O A:HOH2511 3.1 17.9 1.0
HH12 A:ARG78 3.3 15.4 1.0
P A:PO43001 3.4 11.0 0.7
P A:PO43001 3.5 10.7 0.3
O1 A:PO43001 3.6 5.5 0.7
O A:HOH2001 3.7 14.5 0.3
O2 A:PO43001 3.8 11.4 0.7
OE2 A:GLU58 3.8 9.3 0.6
O1 A:PO43001 4.0 12.9 0.3
O3 A:PO43002 4.0 7.9 0.3
O3 A:PO43002 4.0 10.9 0.7
NH1 A:ARG78 4.0 12.8 1.0
OD2 A:ASP71 4.1 13.0 1.0
O3 A:PO43001 4.1 9.9 0.3
HZ2 A:LYS73 4.1 40.1 1.0
O A:HOH2287 4.1 18.6 1.0
HH11 A:ARG78 4.1 15.4 1.0
O A:HOH2164 4.1 42.1 1.0
O A:HOH2521 4.2 26.4 1.0
O A:HOH2175 4.2 35.8 1.0
O A:HOH2520 4.3 14.8 1.0
O A:HOH2185 4.5 19.0 1.0
OE1 A:GLU58 4.6 10.6 0.6
CD A:GLU58 4.6 8.8 0.6
OE1 A:GLU58 4.6 14.9 0.5
O A:HOH2087 4.6 32.9 1.0
HZ1 A:LYS73 4.7 40.1 1.0
O2 A:PO43001 4.7 15.3 0.3
O A:HOH2213 4.7 35.7 1.0
HZ3 A:LYS56 4.7 32.7 1.0
O3 A:PO43001 4.8 8.8 0.7
NZ A:LYS73 4.8 26.7 1.0
HE3 A:LYS56 4.9 21.7 1.0
OD2 A:ASP117 4.9 12.5 0.4
CG A:ASP71 5.0 13.2 1.0

Manganese binding site 5 out of 9 in 1e9g

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Manganese binding site 5 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1004

b:9.0
occ:1.00
 O1 A:PO43001 2.0 12.9 0.3
OD2 A:ASP147 2.1 9.9 1.0
O2 A:PO43002 2.1 10.2 0.7
O A:HOH2519 2.2 10.0 1.0
OD2 A:ASP152 2.2 8.7 1.0
O1 A:PO43001 2.2 5.5 0.7
O A:HOH2518 2.3 9.8 1.0
O2 A:PO43002 2.3 7.2 0.3
HZ2 A:LYS154 3.1 19.4 1.0
CG A:ASP152 3.2 9.4 1.0
P A:PO43002 3.2 8.3 0.7
CG A:ASP147 3.2 9.0 1.0
P A:PO43001 3.3 10.7 0.3
O1 A:PO43002 3.4 9.1 0.7
O3 A:PO43001 3.5 9.9 0.3
HB3 A:ASP147 3.5 11.0 1.0
P A:PO43001 3.5 11.0 0.7
OD1 A:ASP152 3.7 9.6 1.0
MN A:MN1001 3.7 8.6 1.0
P A:PO43002 3.7 8.8 0.3
HB2 A:ASP147 3.7 11.0 1.0
CB A:ASP147 3.7 9.1 1.0
O3 A:PO43001 3.8 8.8 0.7
HH A:TYR192 3.9 15.8 1.0
O3 A:PO43002 3.9 10.9 0.7
OD2 A:ASP115 3.9 8.8 0.6
NZ A:LYS154 3.9 13.0 1.0
OH A:TYR192 4.0 10.5 1.0
O A:HOH2520 4.1 14.8 1.0
HZ1 A:LYS154 4.1 19.4 1.0
O3 A:PO43002 4.1 7.9 0.3
O A:HOH2514 4.1 13.4 1.0
OD2 A:ASP115 4.1 7.6 0.4
O2 A:PO43001 4.1 15.3 0.3
HZ2 A:LYS193 4.2 18.4 1.0
HZ3 A:LYS154 4.3 19.4 1.0
OD1 A:ASP147 4.3 9.8 1.0
O A:HOH2322 4.4 10.5 1.0
CB A:ASP152 4.4 8.2 1.0
O2 A:PO43001 4.4 11.4 0.7
O4 A:PO43001 4.4 9.9 0.3
HB2 A:ASP152 4.4 9.8 1.0
O4 A:PO43002 4.4 9.7 0.7
HD21 A:LEU145 4.5 17.6 1.0
O4 A:PO43001 4.5 10.3 0.7
HB3 A:ASP152 4.6 9.8 1.0
O4 A:PO43002 4.6 9.4 0.3
HZ3 A:LYS193 4.6 18.4 1.0
O1 A:PO43002 4.7 7.3 0.3
OD2 A:ASP120 4.7 8.4 1.0
O A:HOH2523 4.8 10.7 0.7
HD22 A:LEU145 4.9 17.6 1.0
HB2 A:ASP115 4.9 10.1 0.4
NZ A:LYS193 4.9 12.3 1.0
HH A:TYR93 4.9 15.0 1.0
HE2 A:LYS154 4.9 14.4 1.0
CE A:LYS154 5.0 12.0 1.0
MN A:MN1003 5.0 11.2 0.7

Manganese binding site 6 out of 9 in 1e9g

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Manganese binding site 6 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1005

b:7.7
occ:1.00
 OD1 B:ASP152 2.1 8.8 1.0
OD2 B:ASP120 2.1 8.0 1.0
O4 B:PO43002 2.2 7.5 1.0
OD2 B:ASP115 2.2 8.4 1.0
O B:HOH2488 2.2 8.4 1.0
O B:HOH2489 2.3 7.9 1.0
CG B:ASP152 3.1 8.1 1.0
CG B:ASP120 3.1 7.4 1.0
CG B:ASP115 3.2 8.4 1.0
P B:PO43002 3.3 8.5 1.0
O1 B:PO43002 3.3 7.4 1.0
OD1 B:ASP120 3.3 7.5 1.0
OD2 B:ASP152 3.5 7.4 1.0
HZ3 B:LYS154 3.5 21.0 1.0
OD1 B:ASP115 3.6 8.9 1.0
MN B:MN1006 3.6 7.6 1.0
O B:HOH2496 3.7 9.1 1.0
MN B:MN1008 3.7 8.2 1.0
HB3 B:ASP117 3.8 8.3 0.4
HZ1 B:LYS154 3.8 21.0 1.0
HZ2 B:LYS154 3.8 21.0 1.0
O3 B:PO43002 3.9 8.0 1.0
NZ B:LYS154 3.9 14.0 1.0
HH B:TYR93 4.0 12.7 1.0
O B:HOH2246 4.1 9.0 1.0
HA B:ASP152 4.3 9.4 1.0
CB B:ASP152 4.4 8.0 1.0
CB B:ASP120 4.5 7.0 1.0
CB B:ASP115 4.5 9.1 1.0
OD2 B:ASP117 4.5 10.3 1.0
O B:HOH2491 4.5 8.8 1.0
O2 B:PO43002 4.5 8.7 1.0
OH B:TYR93 4.5 8.5 1.0
CB B:ASP117 4.6 8.8 1.0
HB2 B:ASP120 4.6 8.4 1.0
HB3 B:ASP115 4.6 10.9 1.0
HB2 B:ASP115 4.6 10.9 1.0
O B:PRO118 4.7 8.0 1.0
HG3 B:GLU101 4.7 9.9 1.0
O B:HOH2497 4.7 8.6 1.0
HB2 B:ASP152 4.8 9.5 1.0
HB2 B:ASP117 4.8 22.7 0.6
CA B:ASP152 4.8 7.8 1.0
HB3 B:ASP120 5.0 8.4 1.0

Manganese binding site 7 out of 9 in 1e9g

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Manganese binding site 7 out of 9 in the Structure of Inorganic Pyrophosphatase


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1006

b:7.6
occ:1.00
 O1 B:PO43002 2.1 7.4 1.0
O B:HOH2490 2.1 8.2 1.0
OD1 B:ASP120 2.2 7.5 1.0
O B:HOH2491 2.2 8.8 1.0
O B:HOH2492 2.2 12.8 1.0
O B:HOH2489 2.3 7.9 1.0
CG B:ASP120 3.2 7.4 1.0
HH B:TYR93 3.2 12.7 1.0
P B:PO43002 3.3 8.5 1.0
O3 B:PO43002 3.6 8.0 1.0
OD2 B:ASP120 3.6 8.0 1.0
HE2 B:TYR93 3.6 10.1 1.0
MN B:MN1005 3.6 7.7 1.0
O B:HOH2132 3.9 9.5 1.0
O4 B:PO43002 3.9 7.5 1.0
OH B:TYR93 4.0 8.5 1.0
HB3 B:ALA95 4.1 14.6 1.0
O B:HOH2488 4.2 8.4 1.0
O B:PRO118 4.2 8.0 1.0
OE1 B:GLU48 4.3 8.3 1.0
HA B:ASP120 4.3 8.1 1.0
CE2 B:TYR93 4.3 8.4 1.0
CB B:ASP120 4.4 7.0 1.0
OD2 B:ASP117 4.4 10.3 1.0
O B:HOH2155 4.4 12.6 1.0
HB3 B:ASP120 4.5 8.4 1.0
HB3 B:ASP117 4.5 18.8 0.4
HB2 B:ASP117 4.5 22.7 0.6
O2 B:PO43002 4.5 8.7 1.0
CZ B:TYR93 4.6 8.1 1.0
HZ3 B:LYS56 4.6 15.2 1.0
OE2 B:GLU48 4.6 9.5 1.0
CB B:ASP117 4.6 8.8 1.0
HB3 B:ASP117 4.6 8.3 0.4
CG B:ASP117 4.7 10.2 1.0
O B:GLY94 4.7 7.3 1.0
HD2 B:PRO118 4.8 10.1 1.0
CA B:ASP120 4.8 6.8 1.0
HG2 B:GLU58 4.9 7.9 0.6
O B:HOH2147 4.9 10.0 1.0
HZ2 B:LYS56 4.9 15.2 1.0
CD B:GLU48 4.9 8.0 1.0
HZ1 B:LYS56 4.9 15.2 1.0
HZ3 B:LYS154 5.0 21.0 1.0

Manganese binding site 8 out of 9 in 1e9g

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Manganese binding site 8 out of 9 in the Structure of Inorganic Pyrophosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1007

b:9.6
occ:1.00
 OE2 B:GLU58 2.1 5.8 0.6
O3 B:PO43001 2.1 10.1 1.0
O3 B:PO43002 2.1 8.0 1.0
O B:HOH2495 2.2 9.5 1.0
O B:HOH2494 2.2 13.0 1.0
O B:HOH2493 2.2 13.3 1.0
OE2 B:GLU58 2.5 11.1 0.4
CD B:GLU58 3.1 8.6 0.6
HZ1 B:LYS56 3.1 15.2 1.0
P B:PO43001 3.3 9.3 1.0
O4 B:PO43001 3.4 9.2 1.0
CD B:GLU58 3.4 9.0 0.4
OE1 B:GLU58 3.4 10.7 0.6
P B:PO43002 3.6 8.5 1.0
OE1 B:GLU58 3.6 16.9 0.4
HH12 B:ARG78 3.7 11.2 1.0
HZ3 B:LYS56 3.8 15.2 1.0
NZ B:LYS56 3.8 10.1 1.0
O2 B:PO43002 4.0 8.7 1.0
HE3 B:LYS56 4.1 11.6 1.0
O1 B:PO43001 4.2 8.2 1.0
O B:HOH2095 4.2 26.0 1.0
O B:HOH2096 4.3 32.6 1.0
O B:HOH2261 4.3 11.7 1.0
O B:HOH2489 4.3 7.9 1.0
O4 B:PO43002 4.3 7.5 1.0
OD2 B:ASP117 4.3 10.3 1.0
OD2 B:ASP71 4.4 9.2 0.4
NH1 B:ARG78 4.4 9.3 1.0
O2 B:PO43001 4.4 10.0 1.0
CG B:GLU58 4.4 6.6 0.6
O B:HOH2492 4.4 12.8 1.0
HH11 B:ARG78 4.5 11.2 1.0
CE B:LYS56 4.5 9.7 1.0
HG2 B:GLU58 4.5 7.9 0.6
HZ2 B:LYS56 4.5 15.2 1.0
HD2 B:LYS56 4.6 10.7 1.0
O1 B:PO43002 4.6 7.4 1.0
HG3 B:GLU58 4.8 7.9 0.6
CG B:GLU58 4.8 7.7 0.4
O B:HOH2496 4.9 9.1 1.0
HG2 B:GLU58 4.9 9.2 0.4
MN B:MN1008 4.9 8.2 1.0
OD2 B:ASP71 4.9 16.0 0.6

Manganese binding site 9 out of 9 in 1e9g

Go back to Manganese Binding Sites List in 1e9g
Manganese binding site 9 out of 9 in the Structure of Inorganic Pyrophosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Structure of Inorganic Pyrophosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1008

b:8.2
occ:1.00
 OD2 B:ASP147 2.1 8.3 1.0
O4 B:PO43001 2.2 9.2 1.0
O B:HOH2496 2.2 9.1 1.0
O4 B:PO43002 2.2 7.5 1.0
OD2 B:ASP152 2.2 7.4 1.0
O B:HOH2497 2.3 8.6 1.0
CG B:ASP147 3.2 7.5 1.0
CG B:ASP152 3.2 8.1 1.0
HZ2 B:LYS154 3.3 21.0 1.0
P B:PO43002 3.3 8.5 1.0
O2 B:PO43002 3.4 8.7 1.0
P B:PO43001 3.5 9.3 1.0
HB3 B:ASP147 3.5 9.5 1.0
MN B:MN1005 3.7 7.7 1.0
OD1 B:ASP152 3.7 8.8 1.0
O1 B:PO43001 3.7 8.2 1.0
HB2 B:ASP147 3.7 9.5 1.0
CB B:ASP147 3.8 7.9 1.0
HH B:TYR192 3.9 13.8 1.0
O3 B:PO43002 3.9 8.0 1.0
OD2 B:ASP115 4.0 8.4 1.0
OH B:TYR192 4.0 9.2 1.0
O B:HOH2499 4.0 13.1 1.0
NZ B:LYS154 4.1 14.0 1.0
O B:HOH2495 4.1 9.5 1.0
HZ1 B:LYS193 4.1 14.0 1.0
O B:HOH2297 4.3 10.3 1.0
HZ3 B:LYS154 4.3 21.0 1.0
OD1 B:ASP147 4.3 8.9 1.0
HZ1 B:LYS154 4.3 21.0 1.0
CB B:ASP152 4.4 8.0 1.0
O2 B:PO43001 4.4 10.0 1.0
HB2 B:ASP152 4.4 9.5 1.0
HZ2 B:LYS193 4.5 14.0 1.0
O3 B:PO43001 4.5 10.1 1.0
HD21 B:LEU145 4.5 15.4 1.0
O1 B:PO43002 4.6 7.4 1.0
HB3 B:ASP152 4.6 9.5 1.0
OD2 B:ASP120 4.7 8.0 1.0
NZ B:LYS193 4.7 9.3 1.0
O B:HOH2489 4.8 7.9 1.0
HD22 B:LEU145 4.8 15.4 1.0
MN B:MN1007 4.9 9.6 1.0

Reference:

P.Heikinheimo, V.Tuominen, A.-K.Ahonen, A.Teplyakov, B.S.Cooperman, A.A.Baykov, R.Lahti, A.Goldman. Toward A Quantum-Mechanical Description of Metal-Assisted Phosphoryl Transfer in Pyrophosphatase Proc.Natl.Acad.Sci.Usa V. 98 3121 2001.
ISSN: ISSN 0027-8424
PubMed: 11248042
DOI: 10.1073/PNAS.061612498
Page generated: Sat Oct 5 10:09:21 2024

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