Manganese in PDB 1dq6: Manganese;Manganese Concanavalin A at pH 7.0

The structure of Manganese;Manganese Concanavalin A at pH 7.0, PDB code: 1dq6 was solved by J.Bouckaert, Y.Dewallef, F.Poortmans, L.Wyns, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.90
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	63.200, 87.410, 89.300, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / n/a

The binding sites of Manganese atom in the Manganese;Manganese Concanavalin A at pH 7.0 (pdb code 1dq6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Manganese;Manganese Concanavalin A at pH 7.0, PDB code: 1dq6:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Manganese;Manganese Concanavalin A at pH 7.0


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Manganese;Manganese Concanavalin A at pH 7.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:15.3 occ:1.00 OE2 A:GLU8 2.2 8.5 1.0 OD2 A:ASP10 2.2 7.4 1.0 NE2 A:HIS24 2.2 5.5 1.0 O A:HOH321 2.4 18.2 1.0 O A:HOH316 2.5 15.9 1.0 OD1 A:ASP19 2.6 15.0 1.0 CE1 A:HIS24 3.1 7.0 1.0 CG A:ASP10 3.1 8.3 1.0 CG A:ASP19 3.2 15.3 1.0 CD A:GLU8 3.2 8.6 1.0 CD2 A:HIS24 3.3 6.7 1.0 OD2 A:ASP19 3.4 13.7 1.0 CB A:ASP10 3.4 7.1 1.0 OE1 A:GLU8 3.6 9.9 1.0 OD1 A:ASP10 4.2 8.5 1.0 O A:HOH310 4.2 15.0 1.0 OG A:SER34 4.2 12.8 1.0 O A:HOH375 4.2 32.5 1.0 ND1 A:HIS24 4.3 8.0 1.0 MN A:MN302 4.3 13.0 1.0 CB A:ASP19 4.3 15.5 1.0 CG A:HIS24 4.4 8.0 1.0 CG A:GLU8 4.6 7.1 1.0 CA A:ASP19 4.6 16.8 1.0 O A:VAL32 4.7 13.1 1.0 O A:HOH381 4.9 33.4 1.0 CA A:ASP10 5.0 8.2 1.0

Manganese binding site 2 out of 2 in the Manganese;Manganese Concanavalin A at pH 7.0


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Manganese;Manganese Concanavalin A at pH 7.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:13.0 occ:1.00 O A:HOH312 2.1 15.4 1.0 OD1 A:ASP10 2.2 8.5 1.0 O A:TYR12 2.4 11.3 1.0 OD2 A:ASP19 2.4 13.7 1.0 O A:HOH310 2.5 15.0 1.0 OD1 A:ASN14 2.5 14.9 1.0 OD2 A:ASP10 2.6 7.4 1.0 CG A:ASP10 2.8 8.3 1.0 CG A:ASP19 3.5 15.3 1.0 C A:TYR12 3.6 12.4 1.0 CG A:ASN14 3.6 15.6 1.0 OD1 A:ASP19 3.9 15.0 1.0 N A:ASN14 4.0 15.3 1.0 CB A:ASN14 4.2 14.7 1.0 CB A:ASP10 4.3 7.1 1.0 N A:TYR12 4.3 11.1 1.0 CA A:TYR12 4.3 11.3 1.0 MN A:MN301 4.3 15.3 1.0 CB A:TYR12 4.5 10.9 1.0 N A:PRO13 4.6 13.9 1.0 O A:ASP208 4.6 7.7 1.0 OD1 A:ASP208 4.6 7.9 1.0 ND2 A:ASN14 4.7 13.8 1.0 CA A:PRO13 4.7 14.7 1.0 CA A:ASN14 4.7 16.1 1.0 CE1 A:HIS24 4.7 7.0 1.0 C A:PRO13 4.8 15.4 1.0 CB A:ASP19 4.8 15.5 1.0 O A:HOH316 4.8 15.9 1.0 O A:ARG228 4.9 10.2 1.0 CB A:ARG228 4.9 11.2 1.0 CA A:ARG228 5.0 10.2 1.0 CD1 A:TYR12 5.0 11.6 1.0

J.Bouckaert, Y.Dewallef, F.Poortmans, L.Wyns, R.Loris. The Structural Features of Concanavalin A Governing Non-Proline Peptide Isomerization J.Biol.Chem. V. 275 19778 2000.
ISSN: ISSN 0021-9258
PubMed: 10748006
DOI: 10.1074/JBC.M001251200