Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
      1cvn
      1cw1
      1cw3
      1cw4
      1d3v
      1d5n
      1d8h
      1dah
      1dbn
      1dck
      1de6
      1de9
      1dgl
      1did
      1do8
      1dq4
      1dq5
      1dq6
      1dzq
      1e24
      1e6a
      1e9g
      1ecc
      1ef2
      1ehz
      1ejj
      1els
      1em1
      1en4
      1en5
      1en6
      1eo4
      1eqj
      1eqz
      1f1h
      1f1r
      1f1u
      1f1v
      1f3w
      1f3x
      1f52
      1f5a
      1f66
      1f9c
      1f9k
      1fa0
      1fat
      1fay
      1fbd
      1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Manganese;Manganese Concanavalin A At pH 7.0 (pdb 1dq6)






The binding sites of Manganese atom in the structure of Manganese;Manganese Concanavalin A At pH 7.0 (pdb code 1dq6). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1dq6 structure was solved by J.BOUCKAERT, Y.DEWALLEF, F.POORTMANS, L.WYNS, R.LORIS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-1.9
Space groupI222
a (A)63.200
b (A)87.410
c (A)89.300
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.6
Rfree (%)n/a


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 1dq6


Manganese binding site 1 out of 2 in 1dq6
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 1dq6
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1dq6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu8, A: Asp10, A: Asp19, A: His24, A: Val32, A: Ser34, A: Mn302, A: Hoh310, A: Hoh316, A: Hoh321, A: Hoh375, A: Hoh381,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu83.56
MnOE2 A:Glu82.21
MnCD A:Glu83.23
MnCG A:Glu84.57
MnCB A:Asp103.44
MnOD2 A:Asp102.22
MnOD1 A:Asp104.17
MnCG A:Asp103.13
MnCA A:Asp104.95
MnCB A:Asp194.33
MnOD2 A:Asp193.39
MnOD1 A:Asp192.62
MnCG A:Asp193.22
MnCA A:Asp194.63
MnNE2 A:His242.24
MnND1 A:His244.28
MnCD2 A:His243.32
MnCE1 A:His243.10
MnCG A:His244.41
MnO A:Val324.67
MnOG A:Ser344.22
MnMN A:Mn3024.32
MnO A:Hoh3104.17
MnO A:Hoh3162.47
MnO A:Hoh3212.40
MnO A:Hoh3754.22
MnO A:Hoh3814.88

interactive model:


Manganese binding site 2 out of 2 in 1dq6


Manganese binding site 2 out of 2 in 1dq6
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 1dq6
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1dq6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp10, A: Tyr12, A: Pro13, A: Asn14, A: Asp19, A: His24, A: Asp208, A: Arg228, A: Mn301, A: Hoh310, A: Hoh312, A: Hoh316,

conact list:


AtomAtomDistance (A)
MnCB A:Asp104.29
MnOD2 A:Asp102.55
MnOD1 A:Asp102.22
MnCG A:Asp102.78
MnO A:Tyr122.36
MnN A:Tyr124.29
MnCB A:Tyr124.47
MnCD1 A:Tyr124.99
MnC A:Tyr123.57
MnCA A:Tyr124.31
MnN A:Pro134.55
MnC A:Pro134.78
MnCA A:Pro134.71
MnN A:Asn144.01
MnCB A:Asn144.23
MnND2 A:Asn144.68
MnOD1 A:Asn142.48
MnCG A:Asn143.62
MnCA A:Asn144.72
MnCB A:Asp194.78
MnOD2 A:Asp192.38
MnOD1 A:Asp193.93
MnCG A:Asp193.51
MnCE1 A:His244.74
MnO A:Asp2084.57
MnOD1 A:Asp2084.59
MnO A:Arg2284.86
MnCB A:Arg2284.88
MnCA A:Arg2284.97
MnMN A:Mn3014.32
MnO A:Hoh3102.45
MnO A:Hoh3122.11
MnO A:Hoh3164.79

interactive model:




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