Manganese in PDB 1cvn: Concanavalin A Complexed to Trimannoside

The structure of Concanavalin A Complexed to Trimannoside, PDB code: 1cvn was solved by J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	81.650, 66.680, 108.320, 90.00, 97.79, 90.00
R / Rfree (%)	20.4 / 25.5

The structure of Concanavalin A Complexed to Trimannoside also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Concanavalin A Complexed to Trimannoside (pdb code 1cvn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Concanavalin A Complexed to Trimannoside, PDB code: 1cvn:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Concanavalin A Complexed to Trimannoside


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Complexed to Trimannoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn238 b:18.2 occ:1.00 O A:HOH245 2.1 2.0 1.0 OD2 A:ASP10 2.1 18.2 1.0 O A:HOH254 2.2 6.7 1.0 OD1 A:ASP19 2.3 14.0 1.0 OE2 A:GLU8 2.3 15.9 1.0 NE2 A:HIS24 2.5 10.4 1.0 CG A:ASP19 3.1 13.0 1.0 CG A:ASP10 3.2 15.2 1.0 CD A:GLU8 3.3 10.9 1.0 CD2 A:HIS24 3.4 11.7 1.0 CE1 A:HIS24 3.4 5.9 1.0 OD2 A:ASP19 3.5 13.8 1.0 OE1 A:GLU8 3.5 11.2 1.0 CB A:ASP10 3.6 12.9 1.0 O A:HOH251 3.9 12.2 1.0 OG A:SER34 4.0 3.3 1.0 CA A:CA239 4.3 8.7 1.0 OD1 A:ASP10 4.3 16.2 1.0 CB A:ASP19 4.3 14.8 1.0 O A:HOH305 4.4 53.3 1.0 O A:VAL32 4.5 10.3 1.0 ND1 A:HIS24 4.5 10.9 1.0 CG A:HIS24 4.6 14.7 1.0 CG A:GLU8 4.6 10.0 1.0 CA A:ASP19 4.6 14.4 1.0 CD A:PRO20 4.8 17.7 1.0

Manganese binding site 2 out of 4 in the Concanavalin A Complexed to Trimannoside


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Concanavalin A Complexed to Trimannoside within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn238 b:24.6 occ:1.00 O B:HOH246 2.1 11.8 1.0 OD2 B:ASP10 2.2 12.1 1.0 OE2 B:GLU8 2.3 23.2 1.0 O B:HOH248 2.4 9.6 1.0 OD1 B:ASP19 2.4 14.0 1.0 NE2 B:HIS24 2.5 14.4 1.0 CG B:ASP19 3.2 11.4 1.0 CG B:ASP10 3.2 12.9 1.0 CD B:GLU8 3.2 20.4 1.0 CE1 B:HIS24 3.5 12.1 1.0 OE1 B:GLU8 3.5 20.2 1.0 CD2 B:HIS24 3.5 17.9 1.0 OD2 B:ASP19 3.5 10.2 1.0 CB B:ASP10 3.6 13.5 1.0 O B:HOH250 4.0 11.2 1.0 OG B:SER34 4.1 8.4 1.0 CA B:CA239 4.3 12.5 1.0 OD1 B:ASP10 4.3 11.4 1.0 CB B:ASP19 4.4 13.9 1.0 O B:VAL32 4.5 13.6 1.0 ND1 B:HIS24 4.6 18.3 1.0 CG B:GLU8 4.6 17.0 1.0 CG B:HIS24 4.6 15.8 1.0 CA B:ASP19 4.7 16.1 1.0 CD B:PRO20 4.8 17.5 1.0

Manganese binding site 3 out of 4 in the Concanavalin A Complexed to Trimannoside


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Concanavalin A Complexed to Trimannoside within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn238 b:23.9 occ:1.00 OD2 C:ASP10 2.0 13.6 1.0 O C:HOH252 2.2 14.8 1.0 O C:HOH253 2.3 10.0 1.0 OE2 C:GLU8 2.3 15.2 1.0 OD1 C:ASP19 2.5 14.9 1.0 NE2 C:HIS24 2.5 15.2 1.0 CG C:ASP10 3.1 18.0 1.0 CG C:ASP19 3.2 9.7 1.0 CD C:GLU8 3.3 14.2 1.0 CE1 C:HIS24 3.4 9.4 1.0 CD2 C:HIS24 3.4 12.7 1.0 CB C:ASP10 3.5 15.0 1.0 OE1 C:GLU8 3.5 13.9 1.0 OD2 C:ASP19 3.6 9.1 1.0 O C:HOH249 3.9 4.0 1.0 OG C:SER34 4.1 7.2 1.0 OD1 C:ASP10 4.2 21.0 1.0 CA C:CA239 4.3 16.4 1.0 CB C:ASP19 4.4 16.4 1.0 ND1 C:HIS24 4.5 13.2 1.0 CG C:HIS24 4.6 15.4 1.0 O C:VAL32 4.6 11.2 1.0 CG C:GLU8 4.6 10.1 1.0 CA C:ASP19 4.7 20.1 1.0 CD C:PRO20 4.8 24.7 1.0 CA C:ASP10 5.0 11.4 1.0

Manganese binding site 4 out of 4 in the Concanavalin A Complexed to Trimannoside


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Concanavalin A Complexed to Trimannoside within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn238 b:14.8 occ:1.00 OD2 D:ASP10 2.0 6.4 1.0 O D:HOH256 2.1 2.4 1.0 OE2 D:GLU8 2.2 12.1 1.0 O D:HOH244 2.2 4.8 1.0 OD1 D:ASP19 2.4 16.3 1.0 NE2 D:HIS24 2.5 4.5 1.0 CG D:ASP10 3.0 5.6 1.0 CG D:ASP19 3.2 10.7 1.0 CD D:GLU8 3.2 13.6 1.0 CE1 D:HIS24 3.4 2.0 1.0 CD2 D:HIS24 3.4 5.5 1.0 OD2 D:ASP19 3.4 13.2 1.0 CB D:ASP10 3.5 9.6 1.0 OE1 D:GLU8 3.5 15.8 1.0 O D:HOH255 3.8 11.5 1.0 OD1 D:ASP10 4.1 2.0 1.0 OG D:SER34 4.2 3.9 1.0 CA D:CA239 4.2 7.5 1.0 CB D:ASP19 4.4 11.5 1.0 O D:HOH264 4.5 16.8 1.0 ND1 D:HIS24 4.5 7.8 1.0 CG D:GLU8 4.5 7.7 1.0 CG D:HIS24 4.5 10.3 1.0 O D:VAL32 4.6 12.1 1.0 CA D:ASP19 4.8 12.5 1.0 CD D:PRO20 4.9 15.9 1.0 CA D:ASP10 5.0 8.6 1.0

J.H.Naismith, R.A.Field. Structural Basis of Trimannoside Recognition By Concanavalin A. J.Biol.Chem. V. 271 972 1996.
ISSN: ISSN 0021-9258
PubMed: 8557713
DOI: 10.1074/JBC.271.2.972