Manganese in PDB 1c30: Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
Enzymatic activity of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
All present enzymatic activity of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S:
6.3.5.5;
Protein crystallography data
The structure of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S, PDB code: 1c30
was solved by
J.B.Thoden,
X.Huang,
F.M.Raushel,
H.M.Holden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.600,
164.600,
332.700,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
n/a /
n/a
|
Other elements in 1c30:
The structure of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S also contains other interesting chemical elements:
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Manganese atom in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
(pdb code 1c30). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the
Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S, PDB code: 1c30:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 1 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn4001
b:23.6
occ:1.00
|
OD1
|
A:ASN301
|
2.0
|
23.7
|
1.0
|
|
O3B
|
A:ADP4000
|
2.1
|
25.4
|
1.0
|
|
O
|
A:HOH4139
|
2.1
|
21.3
|
1.0
|
|
O1
|
A:PO44005
|
2.2
|
27.1
|
1.0
|
|
OE1
|
A:GLU299
|
2.2
|
25.9
|
1.0
|
|
OE2
|
A:GLU299
|
2.3
|
16.4
|
1.0
|
|
CD
|
A:GLU299
|
2.6
|
21.9
|
1.0
|
|
CG
|
A:ASN301
|
2.9
|
21.0
|
1.0
|
|
ND2
|
A:ASN301
|
3.2
|
11.7
|
1.0
|
|
PB
|
A:ADP4000
|
3.3
|
23.1
|
1.0
|
|
P
|
A:PO44005
|
3.4
|
28.4
|
1.0
|
|
O1B
|
A:ADP4000
|
3.5
|
20.2
|
1.0
|
|
O3
|
A:PO44005
|
3.6
|
17.6
|
1.0
|
|
K
|
A:K4004
|
3.7
|
26.6
|
1.0
|
|
MN
|
A:MN4002
|
3.7
|
22.1
|
1.0
|
|
CB
|
A:MET174
|
3.9
|
16.1
|
1.0
|
|
CG
|
A:GLU299
|
4.1
|
14.8
|
1.0
|
|
NH2
|
A:ARG303
|
4.2
|
17.4
|
1.0
|
|
O
|
A:HOH4138
|
4.2
|
25.1
|
1.0
|
|
O4
|
A:PO44005
|
4.2
|
24.4
|
1.0
|
|
O2B
|
A:ADP4000
|
4.3
|
17.7
|
1.0
|
|
CB
|
A:ASN301
|
4.3
|
22.0
|
1.0
|
|
O2
|
A:PO44005
|
4.3
|
19.2
|
1.0
|
|
O
|
A:THR173
|
4.3
|
23.9
|
1.0
|
|
O3A
|
A:ADP4000
|
4.3
|
24.9
|
1.0
|
|
CA
|
A:MET174
|
4.4
|
19.9
|
1.0
|
|
NH2
|
A:ARG129
|
4.4
|
19.9
|
1.0
|
|
O1A
|
A:ADP4000
|
4.5
|
13.4
|
1.0
|
|
PA
|
A:ADP4000
|
4.8
|
24.1
|
1.0
|
|
OE1
|
A:GLN285
|
4.8
|
22.4
|
1.0
|
|
O
|
A:HOH4137
|
4.9
|
34.9
|
1.0
|
|
CB
|
A:GLU299
|
5.0
|
20.8
|
1.0
|
|
OE1
|
A:GLU127
|
5.0
|
32.1
|
1.0
|
|
NH1
|
A:ARG129
|
5.0
|
23.4
|
1.0
|
|
Manganese binding site 2 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 2 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn4002
b:22.1
occ:1.00
|
O1A
|
A:ADP4000
|
2.1
|
13.4
|
1.0
|
|
O3
|
A:PO44005
|
2.1
|
17.6
|
1.0
|
|
OE1
|
A:GLN285
|
2.1
|
22.4
|
1.0
|
|
O
|
A:HOH4136
|
2.1
|
25.2
|
1.0
|
|
O1B
|
A:ADP4000
|
2.2
|
20.2
|
1.0
|
|
OE2
|
A:GLU299
|
2.2
|
16.4
|
1.0
|
|
CD
|
A:GLN285
|
3.0
|
33.4
|
1.0
|
|
P
|
A:PO44005
|
3.2
|
28.4
|
1.0
|
|
PB
|
A:ADP4000
|
3.3
|
23.1
|
1.0
|
|
PA
|
A:ADP4000
|
3.3
|
24.1
|
1.0
|
|
CD
|
A:GLU299
|
3.3
|
21.9
|
1.0
|
|
NE2
|
A:GLN285
|
3.4
|
27.0
|
1.0
|
|
O3A
|
A:ADP4000
|
3.6
|
24.9
|
1.0
|
|
O1
|
A:PO44005
|
3.6
|
27.1
|
1.0
|
|
O3B
|
A:ADP4000
|
3.6
|
25.4
|
1.0
|
|
MN
|
A:MN4001
|
3.7
|
23.6
|
1.0
|
|
O4
|
A:PO44005
|
3.8
|
24.4
|
1.0
|
|
NE2
|
A:HIS243
|
3.8
|
15.9
|
1.0
|
|
K
|
A:K4017
|
3.8
|
36.5
|
1.0
|
|
CG
|
A:GLU299
|
3.8
|
14.8
|
1.0
|
|
CE1
|
A:HIS243
|
4.2
|
18.7
|
1.0
|
|
OE1
|
A:GLU299
|
4.2
|
25.9
|
1.0
|
|
ND2
|
A:ASN301
|
4.2
|
11.7
|
1.0
|
|
O5'
|
A:ADP4000
|
4.3
|
21.3
|
1.0
|
|
O2A
|
A:ADP4000
|
4.3
|
25.4
|
1.0
|
|
C5'
|
A:ADP4000
|
4.3
|
17.5
|
1.0
|
|
O2
|
A:PO44005
|
4.4
|
19.2
|
1.0
|
|
OG1
|
A:THR244
|
4.4
|
19.9
|
1.0
|
|
CG
|
A:GLN285
|
4.4
|
30.9
|
1.0
|
|
O3'
|
A:ADP4000
|
4.5
|
17.6
|
1.0
|
|
O2B
|
A:ADP4000
|
4.6
|
17.7
|
1.0
|
|
CD2
|
A:HIS243
|
4.6
|
20.5
|
1.0
|
|
OD1
|
A:ASN301
|
5.0
|
23.7
|
1.0
|
|
Manganese binding site 3 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 3 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn4007
b:32.2
occ:1.00
|
O2A
|
A:ADP4006
|
2.1
|
31.9
|
1.0
|
|
OE1
|
A:GLN829
|
2.1
|
36.5
|
1.0
|
|
O3B
|
A:ADP4006
|
2.2
|
26.7
|
1.0
|
|
O
|
A:HOH4580
|
2.3
|
24.4
|
1.0
|
|
OE2
|
A:GLU841
|
2.3
|
33.0
|
1.0
|
|
O
|
A:HOH4850
|
2.5
|
41.3
|
1.0
|
|
CD
|
A:GLN829
|
3.1
|
39.9
|
1.0
|
|
CD
|
A:GLU841
|
3.3
|
27.0
|
1.0
|
|
PA
|
A:ADP4006
|
3.4
|
33.3
|
1.0
|
|
PB
|
A:ADP4006
|
3.4
|
29.1
|
1.0
|
|
NE2
|
A:GLN829
|
3.5
|
49.3
|
1.0
|
|
O3A
|
A:ADP4006
|
3.7
|
40.1
|
1.0
|
|
CG
|
A:GLU841
|
3.9
|
23.2
|
1.0
|
|
K
|
A:K4008
|
4.0
|
41.2
|
1.0
|
|
OE1
|
A:GLU841
|
4.1
|
61.8
|
1.0
|
|
O2B
|
A:ADP4006
|
4.1
|
36.8
|
1.0
|
|
O
|
A:HOH4150
|
4.1
|
27.4
|
1.0
|
|
O3'
|
A:ADP4006
|
4.3
|
27.2
|
1.0
|
|
O5'
|
A:ADP4006
|
4.3
|
22.1
|
1.0
|
|
ND2
|
A:ASN843
|
4.3
|
38.0
|
1.0
|
|
O1A
|
A:ADP4006
|
4.3
|
43.7
|
1.0
|
|
CG
|
A:GLN829
|
4.4
|
30.3
|
1.0
|
|
C5'
|
A:ADP4006
|
4.5
|
44.6
|
1.0
|
|
OG
|
A:SER789
|
4.5
|
28.2
|
1.0
|
|
O1B
|
A:ADP4006
|
4.5
|
45.5
|
1.0
|
|
NE2
|
A:HIS788
|
4.6
|
24.6
|
1.0
|
|
CE1
|
A:HIS788
|
4.7
|
21.2
|
1.0
|
|
C3'
|
A:ADP4006
|
4.9
|
22.4
|
1.0
|
|
Manganese binding site 4 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 4 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn4021
b:23.0
occ:1.00
|
O3B
|
C:ADP4020
|
2.0
|
26.2
|
1.0
|
|
O1
|
C:PO44025
|
2.2
|
24.0
|
1.0
|
|
OE1
|
C:GLU299
|
2.2
|
17.4
|
1.0
|
|
O
|
C:HOH4104
|
2.2
|
25.6
|
1.0
|
|
OD1
|
C:ASN301
|
2.2
|
22.9
|
1.0
|
|
OE2
|
C:GLU299
|
2.3
|
24.0
|
1.0
|
|
CD
|
C:GLU299
|
2.6
|
24.8
|
1.0
|
|
CG
|
C:ASN301
|
3.1
|
14.3
|
1.0
|
|
PB
|
C:ADP4020
|
3.3
|
22.0
|
1.0
|
|
P
|
C:PO44025
|
3.4
|
21.3
|
1.0
|
|
ND2
|
C:ASN301
|
3.5
|
18.7
|
1.0
|
|
O1B
|
C:ADP4020
|
3.5
|
26.8
|
1.0
|
|
O3
|
C:PO44025
|
3.5
|
13.2
|
1.0
|
|
K
|
C:K4024
|
3.7
|
25.7
|
1.0
|
|
CB
|
C:MET174
|
3.8
|
32.6
|
1.0
|
|
MN
|
C:MN4022
|
3.8
|
21.9
|
1.0
|
|
CG
|
C:GLU299
|
4.0
|
6.9
|
1.0
|
|
O
|
C:HOH4103
|
4.1
|
22.5
|
1.0
|
|
NH2
|
C:ARG303
|
4.2
|
21.1
|
1.0
|
|
O3A
|
C:ADP4020
|
4.2
|
13.3
|
1.0
|
|
CA
|
C:MET174
|
4.3
|
22.1
|
1.0
|
|
O2
|
C:PO44025
|
4.3
|
20.2
|
1.0
|
|
O
|
C:THR173
|
4.3
|
23.3
|
1.0
|
|
O2B
|
C:ADP4020
|
4.3
|
22.7
|
1.0
|
|
NH2
|
C:ARG129
|
4.3
|
23.7
|
1.0
|
|
O4
|
C:PO44025
|
4.4
|
21.0
|
1.0
|
|
CB
|
C:ASN301
|
4.5
|
20.0
|
1.0
|
|
O1A
|
C:ADP4020
|
4.6
|
20.6
|
1.0
|
|
O
|
C:HOH4102
|
4.8
|
23.9
|
1.0
|
|
OE1
|
C:GLN285
|
4.8
|
28.8
|
1.0
|
|
OE1
|
C:GLU127
|
4.8
|
35.6
|
1.0
|
|
CB
|
C:GLU299
|
4.9
|
21.0
|
1.0
|
|
PA
|
C:ADP4020
|
4.9
|
18.2
|
1.0
|
|
Manganese binding site 5 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 5 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn4022
b:21.9
occ:1.00
|
OE1
|
C:GLN285
|
2.0
|
28.8
|
1.0
|
|
O1A
|
C:ADP4020
|
2.1
|
20.6
|
1.0
|
|
O3
|
C:PO44025
|
2.1
|
13.2
|
1.0
|
|
O
|
C:HOH4101
|
2.2
|
21.7
|
1.0
|
|
O1B
|
C:ADP4020
|
2.2
|
26.8
|
1.0
|
|
OE2
|
C:GLU299
|
2.3
|
24.0
|
1.0
|
|
CD
|
C:GLN285
|
2.9
|
14.7
|
1.0
|
|
PB
|
C:ADP4020
|
3.2
|
22.0
|
1.0
|
|
NE2
|
C:GLN285
|
3.2
|
26.2
|
1.0
|
|
P
|
C:PO44025
|
3.3
|
21.3
|
1.0
|
|
PA
|
C:ADP4020
|
3.3
|
18.2
|
1.0
|
|
CD
|
C:GLU299
|
3.3
|
24.8
|
1.0
|
|
K
|
C:K4037
|
3.5
|
32.3
|
1.0
|
|
O3A
|
C:ADP4020
|
3.6
|
13.3
|
1.0
|
|
O1
|
C:PO44025
|
3.7
|
24.0
|
1.0
|
|
O3B
|
C:ADP4020
|
3.7
|
26.2
|
1.0
|
|
NE2
|
C:HIS243
|
3.7
|
17.2
|
1.0
|
|
MN
|
C:MN4021
|
3.8
|
23.0
|
1.0
|
|
O4
|
C:PO44025
|
3.9
|
21.0
|
1.0
|
|
CG
|
C:GLU299
|
3.9
|
6.9
|
1.0
|
|
CE1
|
C:HIS243
|
4.2
|
13.9
|
1.0
|
|
ND2
|
C:ASN301
|
4.2
|
18.7
|
1.0
|
|
OE1
|
C:GLU299
|
4.3
|
17.4
|
1.0
|
|
O5'
|
C:ADP4020
|
4.3
|
17.2
|
1.0
|
|
O2A
|
C:ADP4020
|
4.3
|
26.3
|
1.0
|
|
CG
|
C:GLN285
|
4.3
|
18.8
|
1.0
|
|
C5'
|
C:ADP4020
|
4.3
|
21.9
|
1.0
|
|
O3'
|
C:ADP4020
|
4.4
|
15.8
|
1.0
|
|
O2
|
C:PO44025
|
4.5
|
20.2
|
1.0
|
|
O2B
|
C:ADP4020
|
4.5
|
22.7
|
1.0
|
|
OG1
|
C:THR244
|
4.5
|
16.0
|
1.0
|
|
CD2
|
C:HIS243
|
4.5
|
13.8
|
1.0
|
|
C3'
|
C:ADP4020
|
4.9
|
15.5
|
1.0
|
|
Manganese binding site 6 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 6 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn4027
b:41.0
occ:1.00
|
O3B
|
C:ADP4026
|
2.0
|
40.7
|
1.0
|
|
O2A
|
C:ADP4026
|
2.2
|
42.7
|
1.0
|
|
OE1
|
C:GLN829
|
2.2
|
43.7
|
1.0
|
|
OE2
|
C:GLU841
|
2.2
|
34.5
|
1.0
|
|
O
|
C:HOH4531
|
2.4
|
36.8
|
1.0
|
|
O
|
C:HOH4530
|
2.5
|
42.1
|
1.0
|
|
CD
|
C:GLN829
|
3.0
|
55.6
|
1.0
|
|
CD
|
C:GLU841
|
3.2
|
52.6
|
1.0
|
|
NE2
|
C:GLN829
|
3.2
|
62.5
|
1.0
|
|
PB
|
C:ADP4026
|
3.4
|
43.3
|
1.0
|
|
PA
|
C:ADP4026
|
3.4
|
37.7
|
1.0
|
|
O3A
|
C:ADP4026
|
3.7
|
55.5
|
1.0
|
|
CG
|
C:GLU841
|
3.8
|
35.2
|
1.0
|
|
OE1
|
C:GLU841
|
4.0
|
65.5
|
1.0
|
|
O2B
|
C:ADP4026
|
4.0
|
79.8
|
1.0
|
|
O
|
C:HOH4116
|
4.2
|
29.9
|
1.0
|
|
K
|
C:K4028
|
4.2
|
39.6
|
1.0
|
|
CG
|
C:GLN829
|
4.3
|
35.3
|
1.0
|
|
O5'
|
C:ADP4026
|
4.4
|
36.4
|
1.0
|
|
O3'
|
C:ADP4026
|
4.4
|
28.8
|
1.0
|
|
ND2
|
C:ASN843
|
4.4
|
33.0
|
1.0
|
|
O1A
|
C:ADP4026
|
4.4
|
40.0
|
1.0
|
|
C5'
|
C:ADP4026
|
4.4
|
37.5
|
1.0
|
|
O1B
|
C:ADP4026
|
4.4
|
42.9
|
1.0
|
|
NE2
|
C:HIS788
|
4.7
|
39.8
|
1.0
|
|
OG
|
C:SER789
|
4.7
|
54.6
|
1.0
|
|
CE1
|
C:HIS788
|
4.8
|
28.5
|
1.0
|
|
C3'
|
C:ADP4026
|
4.9
|
27.3
|
1.0
|
|
Manganese binding site 7 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 7 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn4042
b:25.2
occ:1.00
|
O3B
|
E:ADP4041
|
2.0
|
28.2
|
1.0
|
|
O1
|
E:PO44046
|
2.1
|
22.3
|
1.0
|
|
OD1
|
E:ASN301
|
2.2
|
19.4
|
1.0
|
|
O
|
E:HOH4143
|
2.2
|
25.3
|
1.0
|
|
OE1
|
E:GLU299
|
2.3
|
25.6
|
1.0
|
|
OE2
|
E:GLU299
|
2.4
|
18.2
|
1.0
|
|
CD
|
E:GLU299
|
2.7
|
24.1
|
1.0
|
|
CG
|
E:ASN301
|
3.2
|
19.1
|
1.0
|
|
PB
|
E:ADP4041
|
3.3
|
24.1
|
1.0
|
|
P
|
E:PO44046
|
3.4
|
22.5
|
1.0
|
|
O1B
|
E:ADP4041
|
3.5
|
26.3
|
1.0
|
|
O3
|
E:PO44046
|
3.6
|
14.0
|
1.0
|
|
ND2
|
E:ASN301
|
3.6
|
15.3
|
1.0
|
|
MN
|
E:MN4043
|
3.7
|
23.4
|
1.0
|
|
K
|
E:K4045
|
3.8
|
25.6
|
1.0
|
|
CB
|
E:MET174
|
3.9
|
25.0
|
1.0
|
|
CG
|
E:GLU299
|
4.1
|
11.1
|
1.0
|
|
NH2
|
E:ARG129
|
4.2
|
22.9
|
1.0
|
|
O3A
|
E:ADP4041
|
4.2
|
22.4
|
1.0
|
|
O2
|
E:PO44046
|
4.2
|
18.9
|
1.0
|
|
O2B
|
E:ADP4041
|
4.3
|
22.5
|
1.0
|
|
NH2
|
E:ARG303
|
4.3
|
19.2
|
1.0
|
|
O
|
E:HOH4142
|
4.3
|
18.3
|
1.0
|
|
O4
|
E:PO44046
|
4.3
|
28.5
|
1.0
|
|
CA
|
E:MET174
|
4.4
|
36.9
|
1.0
|
|
O
|
E:THR173
|
4.4
|
24.5
|
1.0
|
|
O1A
|
E:ADP4041
|
4.4
|
25.9
|
1.0
|
|
CB
|
E:ASN301
|
4.6
|
13.8
|
1.0
|
|
OE1
|
E:GLN285
|
4.8
|
27.4
|
1.0
|
|
PA
|
E:ADP4041
|
4.8
|
23.8
|
1.0
|
|
OE1
|
E:GLU127
|
4.8
|
28.3
|
1.0
|
|
O
|
E:HOH4141
|
4.9
|
37.4
|
1.0
|
|
NH1
|
E:ARG129
|
4.9
|
23.2
|
1.0
|
|
O
|
E:MET300
|
4.9
|
20.0
|
1.0
|
|
N
|
E:GLY175
|
5.0
|
28.0
|
1.0
|
|
CB
|
E:GLU299
|
5.0
|
12.6
|
1.0
|
|
CZ
|
E:ARG129
|
5.0
|
24.6
|
1.0
|
|
Manganese binding site 8 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 8 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn4043
b:23.4
occ:1.00
|
O3
|
E:PO44046
|
2.1
|
14.0
|
1.0
|
|
O1A
|
E:ADP4041
|
2.1
|
25.9
|
1.0
|
|
OE1
|
E:GLN285
|
2.1
|
27.4
|
1.0
|
|
O1B
|
E:ADP4041
|
2.2
|
26.3
|
1.0
|
|
OE2
|
E:GLU299
|
2.2
|
18.2
|
1.0
|
|
O
|
E:HOH4140
|
2.3
|
23.0
|
1.0
|
|
CD
|
E:GLN285
|
3.1
|
20.9
|
1.0
|
|
PB
|
E:ADP4041
|
3.2
|
24.1
|
1.0
|
|
PA
|
E:ADP4041
|
3.3
|
23.8
|
1.0
|
|
P
|
E:PO44046
|
3.3
|
22.5
|
1.0
|
|
CD
|
E:GLU299
|
3.4
|
24.1
|
1.0
|
|
NE2
|
E:GLN285
|
3.4
|
31.0
|
1.0
|
|
O3A
|
E:ADP4041
|
3.5
|
22.4
|
1.0
|
|
O1
|
E:PO44046
|
3.6
|
22.3
|
1.0
|
|
O3B
|
E:ADP4041
|
3.6
|
28.2
|
1.0
|
|
MN
|
E:MN4042
|
3.7
|
25.2
|
1.0
|
|
K
|
E:K4058
|
3.7
|
45.0
|
1.0
|
|
NE2
|
E:HIS243
|
3.8
|
21.3
|
1.0
|
|
CG
|
E:GLU299
|
4.0
|
11.1
|
1.0
|
|
O4
|
E:PO44046
|
4.0
|
28.5
|
1.0
|
|
CE1
|
E:HIS243
|
4.1
|
13.9
|
1.0
|
|
O5'
|
E:ADP4041
|
4.2
|
21.0
|
1.0
|
|
OE1
|
E:GLU299
|
4.3
|
25.6
|
1.0
|
|
C5'
|
E:ADP4041
|
4.3
|
16.4
|
1.0
|
|
O2A
|
E:ADP4041
|
4.3
|
20.4
|
1.0
|
|
O3'
|
E:ADP4041
|
4.3
|
20.8
|
1.0
|
|
CG
|
E:GLN285
|
4.4
|
20.5
|
1.0
|
|
O2
|
E:PO44046
|
4.4
|
18.9
|
1.0
|
|
ND2
|
E:ASN301
|
4.5
|
15.3
|
1.0
|
|
OG1
|
E:THR244
|
4.5
|
23.7
|
1.0
|
|
O2B
|
E:ADP4041
|
4.5
|
22.5
|
1.0
|
|
CD2
|
E:HIS243
|
4.7
|
20.2
|
1.0
|
|
C3'
|
E:ADP4041
|
4.9
|
23.4
|
1.0
|
|
OD1
|
E:ASN301
|
4.9
|
19.4
|
1.0
|
|
Manganese binding site 9 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 9 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn4048
b:37.3
occ:1.00
|
O3B
|
E:ADP4047
|
2.0
|
31.9
|
1.0
|
|
OE2
|
E:GLU841
|
2.1
|
44.3
|
1.0
|
|
O2A
|
E:ADP4047
|
2.1
|
45.3
|
1.0
|
|
OE1
|
E:GLN829
|
2.2
|
30.0
|
1.0
|
|
O
|
E:HOH4578
|
2.3
|
27.0
|
1.0
|
|
O
|
E:HOH4579
|
2.4
|
33.8
|
1.0
|
|
CD
|
E:GLU841
|
3.1
|
31.7
|
1.0
|
|
CD
|
E:GLN829
|
3.3
|
55.0
|
1.0
|
|
PA
|
E:ADP4047
|
3.3
|
38.5
|
1.0
|
|
PB
|
E:ADP4047
|
3.4
|
31.6
|
1.0
|
|
O3A
|
E:ADP4047
|
3.6
|
34.5
|
1.0
|
|
CG
|
E:GLU841
|
3.6
|
19.4
|
1.0
|
|
NE2
|
E:GLN829
|
3.8
|
36.1
|
1.0
|
|
K
|
E:K4049
|
4.0
|
50.1
|
1.0
|
|
OE1
|
E:GLU841
|
4.0
|
38.9
|
1.0
|
|
C5'
|
E:ADP4047
|
4.2
|
40.7
|
1.0
|
|
O5'
|
E:ADP4047
|
4.2
|
36.9
|
1.0
|
|
O2B
|
E:ADP4047
|
4.2
|
64.0
|
1.0
|
|
O
|
E:HOH4155
|
4.3
|
35.3
|
1.0
|
|
ND2
|
E:ASN843
|
4.3
|
34.2
|
1.0
|
|
OG
|
E:SER789
|
4.3
|
43.0
|
1.0
|
|
O1A
|
E:ADP4047
|
4.3
|
90.4
|
1.0
|
|
O1B
|
E:ADP4047
|
4.4
|
44.8
|
1.0
|
|
O3'
|
E:ADP4047
|
4.4
|
24.1
|
1.0
|
|
CG
|
E:GLN829
|
4.5
|
38.1
|
1.0
|
|
NE2
|
E:HIS788
|
4.7
|
23.5
|
1.0
|
|
C3'
|
E:ADP4047
|
4.9
|
21.4
|
1.0
|
|
CE1
|
E:HIS788
|
4.9
|
23.7
|
1.0
|
|
O
|
E:HOH4153
|
5.0
|
36.6
|
1.0
|
|
Manganese binding site 10 out
of 12 in 1c30
Go back to
Manganese Binding Sites List in 1c30
Manganese binding site 10 out
of 12 in the Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Crystal Structure of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn4063
b:27.5
occ:1.00
|
O1
|
G:PO44067
|
2.0
|
17.0
|
1.0
|
|
OD1
|
G:ASN301
|
2.1
|
39.2
|
1.0
|
|
OE1
|
G:GLU299
|
2.2
|
17.6
|
1.0
|
|
O3B
|
G:ADP4062
|
2.3
|
19.3
|
1.0
|
|
OE2
|
G:GLU299
|
2.4
|
22.4
|
1.0
|
|
O
|
G:HOH4152
|
2.4
|
18.7
|
1.0
|
|
CD
|
G:GLU299
|
2.6
|
14.9
|
1.0
|
|
CG
|
G:ASN301
|
3.1
|
20.8
|
1.0
|
|
O1B
|
G:ADP4062
|
3.2
|
16.2
|
1.0
|
|
PB
|
G:ADP4062
|
3.3
|
22.1
|
1.0
|
|
P
|
G:PO44067
|
3.3
|
35.5
|
1.0
|
|
ND2
|
G:ASN301
|
3.4
|
27.5
|
1.0
|
|
MN
|
G:MN4064
|
3.7
|
25.1
|
1.0
|
|
K
|
G:K4066
|
3.7
|
28.1
|
1.0
|
|
O3
|
G:PO44067
|
3.7
|
21.9
|
1.0
|
|
CB
|
G:MET174
|
3.8
|
20.9
|
1.0
|
|
CG
|
G:GLU299
|
4.1
|
8.2
|
1.0
|
|
O
|
G:THR173
|
4.1
|
27.2
|
1.0
|
|
NH2
|
G:ARG129
|
4.1
|
27.5
|
1.0
|
|
CA
|
G:MET174
|
4.2
|
26.9
|
1.0
|
|
O4
|
G:PO44067
|
4.2
|
22.3
|
1.0
|
|
O2
|
G:PO44067
|
4.2
|
23.5
|
1.0
|
|
NH2
|
G:ARG303
|
4.2
|
16.9
|
1.0
|
|
O
|
G:HOH4151
|
4.2
|
29.0
|
1.0
|
|
O3A
|
G:ADP4062
|
4.3
|
24.4
|
1.0
|
|
O2B
|
G:ADP4062
|
4.4
|
23.9
|
1.0
|
|
CB
|
G:ASN301
|
4.5
|
15.1
|
1.0
|
|
O1A
|
G:ADP4062
|
4.5
|
25.1
|
1.0
|
|
NH1
|
G:ARG129
|
4.7
|
28.1
|
1.0
|
|
O
|
G:HOH4150
|
4.8
|
50.7
|
1.0
|
|
PA
|
G:ADP4062
|
4.9
|
27.2
|
1.0
|
|
CZ
|
G:ARG129
|
4.9
|
25.2
|
1.0
|
|
OE1
|
G:GLN285
|
4.9
|
24.9
|
1.0
|
|
OE1
|
G:GLU127
|
5.0
|
43.5
|
1.0
|
|
Reference:
J.B.Thoden,
X.Huang,
F.M.Raushel,
H.M.Holden.
The Small Subunit of Carbamoyl Phosphate Synthetase: Snapshots Along the Reaction Pathway. Biochemistry V. 38 16158 1999.
ISSN: ISSN 0006-2960
PubMed: 10587438
DOI: 10.1021/BI991741J
Page generated: Tue Dec 15 03:46:33 2020
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