Manganese in PDB 1aoi: Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment

The structure of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment, PDB code: 1aoi was solved by K.Luger, A.W.Maeder, R.K.Richmond, D.F.Sargent, T.J.Richmond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	106.040, 181.780, 110.120, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 30.2

The binding sites of Manganese atom in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment (pdb code 1aoi). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment, PDB code: 1aoi:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ I:Mn147 b:99.8 occ:1.00 OP1 I:DA67 4.0 46.5 1.0

Manganese binding site 2 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ I:Mn500 b:63.7 occ:1.00 O4' I:DG87 4.0 27.9 1.0 O2 I:DT86 4.1 36.9 1.0 C4' I:DG87 4.2 27.9 1.0 N3 I:DG87 4.5 54.8 1.0 O2 J:DT208 4.5 36.4 1.0 C1' I:DG87 4.5 27.9 1.0 O4' I:DC88 4.5 50.8 1.0 O4' J:DT208 4.6 28.5 1.0 C2 J:DA207 4.6 28.9 1.0 C4' I:DC88 4.8 50.8 1.0 N3 J:DA207 4.8 28.9 1.0 C5' I:DC88 4.9 50.8 1.0

Manganese binding site 3 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range:

Manganese binding site 4 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ J:Mn293 b:0.8 occ:1.00 OP1 J:DA223 4.5 77.5 1.0 OP2 J:DA223 4.6 77.5 1.0 P J:DA223 5.0 77.5 1.0

Manganese binding site 5 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range:

Manganese binding site 6 out of 6 in the Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Complex Between Nucleosome Core Particle (H3,H4,H2A,H2B) and 146 Bp Long Dna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ J:Mn400 b:0.8 occ:1.00 OP1 J:DT167 2.9 0.5 1.0 P J:DT167 4.1 0.5 1.0 O3' J:DT166 4.2 75.6 1.0 C5' J:DT167 4.3 0.1 1.0 O5' J:DT167 4.8 0.1 1.0

K.Luger, A.W.Mader, R.K.Richmond, D.F.Sargent, T.J.Richmond. Crystal Structure of the Nucleosome Core Particle at 2.8 A Resolution. Nature V. 389 251 1997.
ISSN: ISSN 0028-0836
PubMed: 9305837
DOI: 10.1038/38444