Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim
      8icw
      8icx
      8icy
      8prk
      8xia
      9ica
      9icl
      9icq
      9icr
      9ics
      9ict
      9icu
      9xia
      9xim

Manganese in the structure of X-Ray Analysis of D-Xylose Isomerase At 1.9 Angstroms: Native Enzyme in Complex With Substrate and With A Mechanism-Designed Inactivator (pdb 9xia)






The binding sites of Manganese atom in the structure of X-Ray Analysis of D-Xylose Isomerase At 1.9 Angstroms: Native Enzyme in Complex With Substrate and With A Mechanism-Designed Inactivator (pdb code 9xia). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 9xia structure was solved by H.L.CARRELL, J.P.GLUSKER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-1.9
Space groupI222
a (A)93.800
b (A)100.000
c (A)103.000
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)n/a
Rfree (%)n/a


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 9xia


Manganese binding site 1 out of 2 in 9xia
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 9xia
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 9xia. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys183, A: Glu217, A: His220, A: Asn247, A: Asp255, A: Asp257, A: Asp287, A: Dfr389, A: Hoh408, A: Hoh411, A: Hoh562, A: Hoh610,

conact list:


AtomAtomDistance (A)
MnCE A:Lys1834.84
MnNZ A:Lys1834.77
MnOE1 A:Glu2172.20
MnOE2 A:Glu2173.37
MnCD A:Glu2173.10
MnCG A:Glu2174.44
MnNE2 A:His2202.35
MnND1 A:His2204.38
MnCD2 A:His2203.03
MnCE1 A:His2203.37
MnCG A:His2204.23
MnND2 A:Asn2474.00
MnCB A:Asp2554.26
MnOD2 A:Asp2552.41
MnOD1 A:Asp2552.28
MnCG A:Asp2552.81
MnCB A:Asp2574.55
MnOD2 A:Asp2572.28
MnOD1 A:Asp2573.29
MnCG A:Asp2573.21
MnCA A:Asp2575.00
MnOD2 A:Asp2874.77
MnO5 A:Dfr3894.67
MnO A:Hoh4082.36
MnO A:Hoh4114.10
MnO A:Hoh5623.76
MnO A:Hoh6104.74

interactive model:


Manganese binding site 2 out of 2 in 9xia


Manganese binding site 2 out of 2 in 9xia
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 9xia
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 9xia. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu181, A: Asn215, A: Glu217, A: His220, A: Asp245, A: Asp287, A: Dfr389, A: Hoh408,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu1813.21
MnOE2 A:Glu1812.29
MnCD A:Glu1813.07
MnCG A:Glu1814.39
MnND2 A:Asn2154.85
MnOE1 A:Glu2174.24
MnCB A:Glu2174.38
MnOE2 A:Glu2172.35
MnCD A:Glu2173.48
MnCG A:Glu2174.22
MnCE1 A:His2204.44
MnCB A:Asp2453.92
MnOD2 A:Asp2454.35
MnOD1 A:Asp2452.31
MnCG A:Asp2453.40
MnCB A:Asp2873.65
MnOD2 A:Asp2872.28
MnOD1 A:Asp2874.32
MnCG A:Asp2873.28
MnC6 A:Dfr3894.37
MnO5 A:Dfr3892.45
MnC5 A:Dfr3893.44
MnC4 A:Dfr3893.14
MnC1 A:Dfr3893.61
MnO1 A:Dfr3892.57
MnC3 A:Dfr3894.53
MnO4 A:Dfr3893.63
MnO6 A:Dfr3893.91
MnC2 A:Dfr3894.81
MnO A:Hoh4084.05

interactive model:




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