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Manganese in PDB 8wzg: Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt.

Enzymatic activity of Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt.

All present enzymatic activity of Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt.:
3.2.1.17;

Protein crystallography data

The structure of Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt., PDB code: 8wzg was solved by B.Maity, M.Shoji, F.Luo, T.Nakane, S.Abe, S.Owada, J.Kang, K.Tono, R.Tanaka, T.T.Thuc, M.Kojima, Y.Hishikawa, J.Tanaka, J.Tian, H.Noya, Y.Nakasuji, A.Asanuma, X.Yao, S.Iwata, Y.Shigeta, E.Nango, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.49 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81, 81, 37.7, 90, 90, 90
R / Rfree (%) 18.6 / 20.1

Other elements in 8wzg:

The structure of Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt. (pdb code 8wzg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt., PDB code: 8wzg:

Manganese binding site 1 out of 1 in 8wzg

Go back to Manganese Binding Sites List in 8wzg
Manganese binding site 1 out of 1 in the Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Sfx Structure of An Mn-Carbonyl Complex Immobilized in Hen Egg White Lysozyme Microcrystals, 10 Ns After Photoexcitation at Rt. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn206

b:31.5
occ:0.90
 MN1 A:XTX206 0.0 31.5 0.9
C2 A:XTX206 1.9 31.7 0.9
C1 A:XTX206 1.9 30.0 0.9
O A:HOH324 2.2 33.8 0.9
NE2 A:HIS15 2.2 31.1 1.0
O A:HOH348 2.2 39.5 0.9
O A:HOH385 2.4 35.1 0.9
CD2 A:HIS15 3.1 29.8 1.0
O1 A:XTX206 3.1 36.6 0.9
O2 A:XTX206 3.1 34.2 0.9
CE1 A:HIS15 3.3 34.9 1.0
OD2 A:ASP87 4.0 39.4 1.0
CG A:HIS15 4.3 26.4 1.0
ND1 A:HIS15 4.3 32.4 1.0
CG A:ASP87 4.7 32.1 1.0
OG1 A:THR89 4.8 28.1 1.0
OD1 A:ASP87 5.0 31.7 1.0

Reference:

B.Maity, M.Shoji, F.Luo, T.Nakane, S.Abe, S.Owada, J.Kang, K.Tono, R.Tanaka, T.T.Pham, M.Kojima, Y.Hishikawa, J.Tanaka, J.Tian, M.Nagama, T.Suzuki, H.Noya, Y.Nakasuji, A.Asanuma, X.Yao, S.Iwata, Y.Shigeta, E.Nango, T.Ueno. Real-Time Observation of A Metal Complex-Driven Reaction Intermediate Using A Porous Protein Crystal and Serial Femtosecond Crystallography. Nat Commun V. 15 5518 2024.
ISSN: ESSN 2041-1723
PubMed: 38951539
DOI: 10.1038/S41467-024-49814-9
Page generated: Sun Oct 6 14:10:37 2024

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