Manganese in PDB 8wzf: Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt.

The structure of Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt., PDB code: 8wzf was solved by B.Maity, M.Shoji, F.Luo, T.Nakane, S.Abe, S.Owada, J.Kang, K.Tono, R.Tanaka, T.T.Thuc, M.Kojima, Y.Hishikawa, J.Tanaka, J.Tian, H.Noya, Y.Nakasuji, A.Asanuma, X.Yao, S.Iwata, Y.Shigeta, E.Nango, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.49 / 1.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	81, 81, 37.7, 90, 90, 90
R / Rfree (%)	19.3 / 22.6

The structure of Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt. also contains other interesting chemical elements:

Sodium	(Na)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Manganese atom in the Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt. (pdb code 8wzf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt., PDB code: 8wzf:

Manganese binding site 1 out of 1 in the Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Dark State Sfx Structure of Hen Egg White Lysozyme Microcrystals Immobilized with A Mn Carbonyl Complex at Rt. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:30.2 occ:1.00 MN1 A:XTX203 0.0 30.2 1.0 C1 A:XTX203 1.9 30.2 1.0 C2 A:XTX203 1.9 30.6 1.0 C3 A:XTX203 1.9 35.1 1.0 O A:HOH320 2.1 31.4 1.0 NE2 A:HIS15 2.3 30.9 1.0 O A:HOH364 2.3 38.8 1.0 O1 A:XTX203 3.1 34.2 1.0 O3 A:XTX203 3.1 41.4 1.0 O2 A:XTX203 3.1 36.5 1.0 CD2 A:HIS15 3.2 28.4 1.0 CE1 A:HIS15 3.3 32.0 1.0 OD2 A:ASP87 4.0 35.9 1.0 CG A:HIS15 4.3 24.9 1.0 ND1 A:HIS15 4.4 30.4 1.0 CG A:ASP87 4.7 28.8 1.0 OG1 A:THR89 4.8 26.1 1.0 OD1 A:ASP87 4.9 28.3 1.0

B.Maity, M.Shoji, F.Luo, T.Nakane, S.Abe, S.Owada, J.Kang, K.Tono, R.Tanaka, T.T.Pham, M.Kojima, Y.Hishikawa, J.Tanaka, J.Tian, M.Nagama, T.Suzuki, H.Noya, Y.Nakasuji, A.Asanuma, X.Yao, S.Iwata, Y.Shigeta, E.Nango, T.Ueno. Real-Time Observation of A Metal Complex-Driven Reaction Intermediate Using A Porous Protein Crystal and Serial Femtosecond Crystallography. Nat Commun V. 15 5518 2024.
ISSN: ESSN 2041-1723
PubMed: 38951539
DOI: 10.1038/S41467-024-49814-9