Manganese in PDB 8v22: Glna Dodecamer with Ampylation

All present enzymatic activity of Glna Dodecamer with Ampylation:
6.3.1.2;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Manganese atom in the Glna Dodecamer with Ampylation (pdb code 8v22). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the Glna Dodecamer with Ampylation, PDB code: 8v22:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn501 b:87.8 occ:1.00 OE2 C:GLU213 2.2 51.8 1.0 OE2 C:GLU221 2.5 47.2 1.0 OE1 C:GLU221 2.7 48.2 1.0 CD C:GLU221 2.8 47.2 1.0 OE2 C:GLU132 3.1 48.1 1.0 CD C:GLU213 3.4 48.6 1.0 HE2 C:HIS211 3.6 32.7 1.0 HG2 C:GLU132 3.7 40.3 1.0 CD C:GLU132 3.9 48.4 1.0 OE1 C:GLU213 4.1 47.8 1.0 CG C:GLU221 4.1 40.7 1.0 HG2 C:GLU221 4.2 40.7 1.0 CG C:GLU132 4.2 40.3 1.0 HG3 C:GLU213 4.4 39.7 1.0 NE2 C:HIS211 4.4 32.7 1.0 CG C:GLU213 4.4 39.7 1.0 HG3 C:GLU132 4.5 40.3 1.0 HB3 C:GLU221 4.6 39.5 1.0 HG2 C:GLU213 4.6 39.7 1.0 HD2 C:HIS270 4.6 44.6 1.0 HE2 C:TYR180 4.6 44.7 1.0 HG3 C:GLU221 4.8 40.7 1.0 CB C:GLU221 4.8 39.5 1.0 OE1 C:GLU132 4.8 49.5 1.0 HB2 C:GLU221 4.9 39.5 1.0 HE1 C:HIS211 5.0 35.3 1.0

Manganese binding site 2 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn501 b:74.2 occ:1.00 OE2 D:GLU213 2.2 50.6 1.0 OE1 D:GLU221 2.7 46.8 1.0 OE2 D:GLU132 2.7 46.7 1.0 CD D:GLU221 3.1 46.0 1.0 OE2 D:GLU221 3.1 46.5 1.0 CD D:GLU213 3.4 48.4 1.0 HG2 D:GLU132 3.6 39.3 1.0 HE1 D:HIS211 3.7 31.8 1.0 CD D:GLU132 3.7 46.1 1.0 CG D:GLU132 4.1 39.3 1.0 OE1 D:GLU213 4.2 46.5 1.0 HG3 D:GLU132 4.2 39.3 1.0 CG D:GLU221 4.3 41.2 1.0 HG3 D:GLU213 4.3 41.2 1.0 HG2 D:GLU221 4.3 41.2 1.0 CG D:GLU213 4.4 41.2 1.0 HG2 D:GLU213 4.4 41.2 1.0 HE2 D:HIS211 4.4 34.1 1.0 HB3 D:GLU221 4.4 42.3 1.0 CE1 D:HIS211 4.5 31.8 1.0 HE2 D:TYR180 4.6 44.3 1.0 OE1 D:GLU132 4.8 46.5 1.0 NE2 D:HIS211 4.8 34.1 1.0 CB D:GLU221 4.8 42.3 1.0 HB2 D:GLU221 4.8 42.3 1.0

Manganese binding site 3 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn501 b:73.5 occ:1.00 OE2 F:GLU213 2.2 52.2 1.0 OE2 F:GLU132 2.7 48.4 1.0 OE1 F:GLU221 2.7 48.4 1.0 OE2 F:GLU221 3.1 45.8 1.0 CD F:GLU221 3.1 46.2 1.0 CD F:GLU213 3.4 49.1 1.0 HE1 F:HIS211 3.7 33.0 1.0 HG2 F:GLU132 3.7 41.0 1.0 CD F:GLU132 3.8 48.9 1.0 OE1 F:GLU213 4.1 50.3 1.0 CG F:GLU132 4.2 41.0 1.0 CG F:GLU221 4.4 39.6 1.0 HG3 F:GLU132 4.4 41.0 1.0 HG2 F:GLU221 4.4 39.6 1.0 CE1 F:HIS211 4.5 33.0 1.0 HE2 F:HIS211 4.5 35.7 1.0 HG3 F:GLU213 4.5 41.3 1.0 CG F:GLU213 4.5 41.3 1.0 HB3 F:GLU221 4.6 38.2 1.0 HG2 F:GLU213 4.6 41.3 1.0 HE2 F:TYR180 4.7 46.6 1.0 OE1 F:GLU132 4.8 46.3 1.0 NE2 F:HIS211 4.9 35.7 1.0 HB3 F:GLU130 4.9 40.4 1.0 CB F:GLU221 4.9 38.2 1.0 HB2 F:GLU221 5.0 38.2 1.0

Manganese binding site 4 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ H:Mn501 b:74.0 occ:1.00 OE1 H:GLU221 2.3 46.1 1.0 OE2 H:GLU132 2.5 48.9 1.0 OE2 H:GLU213 3.1 48.2 1.0 OE1 H:GLU213 3.3 50.4 1.0 CD H:GLU221 3.4 45.6 1.0 CD H:GLU213 3.5 47.9 1.0 CD H:GLU132 3.6 45.8 1.0 HG2 H:GLU132 3.6 40.2 1.0 HE1 H:HIS211 3.8 31.2 1.0 OE2 H:GLU221 3.8 48.9 1.0 CG H:GLU132 4.1 40.2 1.0 HG3 H:GLU132 4.2 40.2 1.0 HB2 H:GLU221 4.3 38.4 1.0 CG H:GLU221 4.6 40.2 1.0 CE1 H:HIS211 4.6 31.2 1.0 HE2 H:TYR180 4.7 41.2 1.0 OE1 H:GLU132 4.7 46.2 1.0 HB3 H:GLU130 4.8 42.2 1.0 CB H:GLU221 4.8 38.4 1.0 HB3 H:GLU221 4.8 38.4 1.0 CG H:GLU213 4.9 39.8 1.0 HG3 H:GLU213 5.0 39.8 1.0

Manganese binding site 5 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ I:Mn501 b:87.8 occ:1.00 OE2 I:GLU213 2.0 51.8 1.0 OE2 I:GLU221 2.6 47.2 1.0 OE1 I:GLU221 2.7 48.2 1.0 CD I:GLU221 2.8 47.2 1.0 OE2 I:GLU132 2.8 48.1 1.0 CD I:GLU213 3.2 48.6 1.0 HG2 I:GLU132 3.5 40.3 1.0 HE2 I:HIS211 3.6 32.7 1.0 CD I:GLU132 3.7 48.4 1.0 OE1 I:GLU213 4.0 47.8 1.0 CG I:GLU132 4.1 40.3 1.0 CG I:GLU221 4.1 40.7 1.0 HG2 I:GLU221 4.2 40.7 1.0 HG3 I:GLU213 4.2 39.7 1.0 CG I:GLU213 4.3 39.7 1.0 HG3 I:GLU132 4.3 40.3 1.0 HG2 I:GLU213 4.4 39.7 1.0 NE2 I:HIS211 4.4 32.7 1.0 HB3 I:GLU221 4.5 39.5 1.0 HE2 I:TYR180 4.6 44.7 1.0 OE1 I:GLU132 4.7 49.5 1.0 HD2 I:HIS270 4.7 44.6 1.0 HG3 I:GLU221 4.8 40.7 1.0 CB I:GLU221 4.8 39.5 1.0 HB2 I:GLU221 4.9 39.5 1.0

Manganese binding site 6 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ J:Mn501 b:74.2 occ:1.00 OE2 J:GLU213 2.0 50.6 1.0 OE2 J:GLU132 2.5 46.7 1.0 OE1 J:GLU221 2.7 46.8 1.0 CD J:GLU221 3.1 46.0 1.0 OE2 J:GLU221 3.2 46.5 1.0 CD J:GLU213 3.2 48.4 1.0 HG2 J:GLU132 3.4 39.3 1.0 CD J:GLU132 3.5 46.1 1.0 HE1 J:HIS211 3.7 31.8 1.0 CG J:GLU132 3.9 39.3 1.0 OE1 J:GLU213 4.0 46.5 1.0 HG3 J:GLU132 4.1 39.3 1.0 HG3 J:GLU213 4.1 41.2 1.0 CG J:GLU213 4.2 41.2 1.0 CG J:GLU221 4.2 41.2 1.0 HG2 J:GLU221 4.2 41.2 1.0 HG2 J:GLU213 4.3 41.2 1.0 HB3 J:GLU221 4.3 42.3 1.0 CE1 J:HIS211 4.5 31.8 1.0 OE1 J:GLU132 4.5 46.5 1.0 HE2 J:HIS211 4.5 34.1 1.0 HE2 J:TYR180 4.6 44.3 1.0 CB J:GLU221 4.7 42.3 1.0 HB2 J:GLU221 4.8 42.3 1.0 NE2 J:HIS211 4.9 34.1 1.0

Manganese binding site 7 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ L:Mn501 b:73.5 occ:1.00 OE2 L:GLU213 1.9 52.2 1.0 OE2 L:GLU132 2.5 48.4 1.0 OE1 L:GLU221 2.7 48.4 1.0 CD L:GLU221 3.1 46.2 1.0 CD L:GLU213 3.1 49.1 1.0 OE2 L:GLU221 3.1 45.8 1.0 HG2 L:GLU132 3.6 41.0 1.0 CD L:GLU132 3.6 48.9 1.0 HE1 L:HIS211 3.6 33.0 1.0 OE1 L:GLU213 3.8 50.3 1.0 CG L:GLU132 4.0 41.0 1.0 HG3 L:GLU213 4.2 41.3 1.0 CG L:GLU213 4.2 41.3 1.0 HG3 L:GLU132 4.3 41.0 1.0 CG L:GLU221 4.3 39.6 1.0 HG2 L:GLU221 4.3 39.6 1.0 HG2 L:GLU213 4.4 41.3 1.0 CE1 L:HIS211 4.4 33.0 1.0 HB3 L:GLU221 4.4 38.2 1.0 HE2 L:TYR180 4.6 46.6 1.0 HE2 L:HIS211 4.6 35.7 1.0 OE1 L:GLU132 4.6 46.3 1.0 CB L:GLU221 4.9 38.2 1.0 NE2 L:HIS211 4.9 35.7 1.0 HB2 L:GLU221 4.9 38.2 1.0

Manganese binding site 8 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:87.8 occ:1.00 OE2 A:GLU213 2.2 51.8 1.0 OE2 A:GLU221 2.5 47.2 1.0 OE1 A:GLU221 2.7 48.2 1.0 CD A:GLU221 2.8 47.2 1.0 OE2 A:GLU132 3.1 48.1 1.0 CD A:GLU213 3.4 48.6 1.0 HE2 A:HIS211 3.6 32.7 1.0 HG2 A:GLU132 3.7 40.3 1.0 CD A:GLU132 3.9 48.4 1.0 OE1 A:GLU213 4.1 47.8 1.0 CG A:GLU221 4.1 40.7 1.0 HG2 A:GLU221 4.2 40.7 1.0 CG A:GLU132 4.2 40.3 1.0 HG3 A:GLU213 4.4 39.7 1.0 NE2 A:HIS211 4.4 32.7 1.0 CG A:GLU213 4.4 39.7 1.0 HG3 A:GLU132 4.5 40.3 1.0 HB3 A:GLU221 4.6 39.5 1.0 HG2 A:GLU213 4.6 39.7 1.0 HD2 A:HIS270 4.6 44.6 1.0 HE2 A:TYR180 4.6 44.7 1.0 HG3 A:GLU221 4.8 40.7 1.0 CB A:GLU221 4.8 39.5 1.0 OE1 A:GLU132 4.8 49.5 1.0 HB2 A:GLU221 4.9 39.5 1.0 HE1 A:HIS211 5.0 35.3 1.0

Manganese binding site 9 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:87.8 occ:1.00 OE2 B:GLU213 2.2 51.8 1.0 OE2 B:GLU221 2.5 47.2 1.0 OE1 B:GLU221 2.7 48.2 1.0 CD B:GLU221 2.8 47.2 1.0 OE2 B:GLU132 3.1 48.1 1.0 CD B:GLU213 3.4 48.6 1.0 HE2 B:HIS211 3.6 32.7 1.0 HG2 B:GLU132 3.7 40.3 1.0 CD B:GLU132 3.9 48.4 1.0 OE1 B:GLU213 4.1 47.8 1.0 CG B:GLU221 4.1 40.7 1.0 HG2 B:GLU221 4.2 40.7 1.0 CG B:GLU132 4.2 40.3 1.0 HG3 B:GLU213 4.4 39.7 1.0 NE2 B:HIS211 4.4 32.7 1.0 CG B:GLU213 4.4 39.7 1.0 HG3 B:GLU132 4.5 40.3 1.0 HB3 B:GLU221 4.6 39.5 1.0 HG2 B:GLU213 4.6 39.7 1.0 HD2 B:HIS270 4.6 44.6 1.0 HE2 B:TYR180 4.6 44.7 1.0 HG3 B:GLU221 4.8 40.7 1.0 CB B:GLU221 4.8 39.5 1.0 OE1 B:GLU132 4.8 49.5 1.0 HB2 B:GLU221 4.9 39.5 1.0 HE1 B:HIS211 5.0 35.3 1.0

Manganese binding site 10 out of 12 in the Glna Dodecamer with Ampylation


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Glna Dodecamer with Ampylation within 5.0Å range: probe atom residue distance (Å) B Occ G:Mn501 b:87.8 occ:1.00 OE2 G:GLU213 2.2 51.8 1.0 OE2 G:GLU221 2.5 47.2 1.0 OE1 G:GLU221 2.7 48.2 1.0 CD G:GLU221 2.8 47.2 1.0 OE2 G:GLU132 3.1 48.1 1.0 CD G:GLU213 3.4 48.6 1.0 HE2 G:HIS211 3.6 32.7 1.0 HG2 G:GLU132 3.7 40.3 1.0 CD G:GLU132 3.9 48.4 1.0 OE1 G:GLU213 4.1 47.8 1.0 CG G:GLU221 4.1 40.7 1.0 HG2 G:GLU221 4.2 40.7 1.0 CG G:GLU132 4.2 40.3 1.0 HG3 G:GLU213 4.4 39.7 1.0 NE2 G:HIS211 4.4 32.7 1.0 CG G:GLU213 4.4 39.7 1.0 HG3 G:GLU132 4.5 40.3 1.0 HB3 G:GLU221 4.6 39.5 1.0 HG2 G:GLU213 4.6 39.7 1.0 HD2 G:HIS270 4.6 44.6 1.0 HE2 G:TYR180 4.6 44.7 1.0 HG3 G:GLU221 4.8 40.7 1.0 CB G:GLU221 4.8 39.5 1.0 OE1 G:GLU132 4.8 49.5 1.0 HB2 G:GLU221 4.9 39.5 1.0 HE1 G:HIS211 5.0 35.3 1.0

A.Gonzalez, A.Sreelatha. Glna Dodecamer with Ampylation To Be Published.